FMO01756.5prime Sequence
899 bp (801 high quality bases) assembled on 2008-04-17
> FMO01756.5prime
CAATCGACATGTATTCCGTTCAATTTGAATATTCCGGCTTTTTAAATAGA
CAAAATTCAAAACAAATTAAACTATGGAATGATGTGGATACACCGGTTGC
TGATGGACAAGTGCACCCGCTATGGTCATGTGCTGCGGCATTTGATTCGG
GCTTCCAGGCGAACTGCGACCTCAACGGGACATCACCAGAGTGCTTCGGG
AAAGGATGTGCCAATGGTGCAAATAAGTCCCGCCGATTGACCACCAAGTT
GGCTCTCCTCCGGCTGAAGCTCCTTTGGGACTGGGACTTCTCCGAGCAGA
AGTTCATTGAAAATTCGAGCCAGGCAGCCGCCGTTTTTACGGACTTCGTA
AGGCGCCGCCGCAATCGGAATGTGGAGCGATGCACTACGCCTATGGGTTT
CAAGCAGATCAAGCACGATCTGTTGGATGATCCGCCCGACTGGAGGCTCA
AAATGATGCGCTTCAAGAAGGAGCACTTCCGGCGGGCCATTCCGCTCAAG
GTGCAGCTGCTGCGGCACTACGACCATCGTTTCGCCTTCCTGGACGTGGT
CTTCGTGGCCCTGCGGAGATCCAATGACTTTCGCTCGCCGGCGGAACTTA
GTGAGATGACGGAGCTGCTAAAGGAGTTCATAGATCCCGCTCATTTAAGG
GTGCCCCATCCCCTGATCTTCGCCGAGGTGTTCATGCGCTTCCGACGCGA
CTATTCCGTGTAACCCTCGAGAATGGGCAATGTGCATGACAACAGTCGCT
GCATGGGCCAGTGGCTCGTCTCCACGTACAAGTGGTGCGTTTCGACATCC
TCACCAGCACCCGCTGATCGATATTCCCGAGTTCGAGGAGTGGATGCCTC
CGGTGCTGTCCAGGATGGGTCGCAGCTTTGAGCAAGCTTTCTAGACCAT
FMO01756.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30412-RA | 1063 | CG30412-RA | 10..886 | 7..881 | 4230 | 99 | Plus |
| CG30412-RC | 1072 | CG30412-RC | 10..895 | 7..881 | 4130 | 98 | Plus |
| CG30412-RB | 1160 | CG30412-RB | 332..983 | 232..881 | 3105 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23318366..23319017 | 881..232 | 3055 | 98.6 | Minus |
| 2R | 25286936 | 2R | 23319114..23319339 | 232..7 | 1130 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:39:28 has no hits.
FMO01756.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:56:11 Download gff for
FMO01756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30412-RA | 5..886 | 1..881 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:44 Download gff for
FMO01756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30412-RA | 5..886 | 1..881 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:48 Download gff for
FMO01756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30412-RA | 5..886 | 1..881 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:48 Download gff for
FMO01756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23318366..23319016 | 233..881 | 98 | <- | Minus |
| 2R | 23319114..23319342 | 1..232 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:44 Download gff for
FMO01756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19205889..19206539 | 233..881 | 98 | <- | Minus |
| arm_2R | 19206637..19206865 | 1..232 | 98 | | Minus |
