FMO01760.5prime Sequence
864 bp (780 high quality bases) assembled on 2008-04-17
> FMO01760.5prime
AAACCCAAAGTTATCAGTCGACATGGAGGCGTCAGCAAGTATAAATTTGC
GGCCGGTGGTGAACGTTCCTACGATTTATAAGGATCCCTGGTACATGATC
ACAGTGCTGGTCCTCTATCTGTACTTCGTCACCAAAGCGGGTCCGCATTT
CATGGAATGGCGCAAACCTTACGAGCTCAAGCGACTTATCTTGCTACATA
ATTTCATCCAGGTGGTTTCCTGCATATATGCTATCAAAGAGGTCCTGTAC
ATTACGGACAACACCATATACATCTTTTGGAAGTGCCGCGACATCGGGAG
CAGCCCAAAGCTCGTGAGGCGGTACTACAACTTGGCCTACTTTCTCTTCT
GGCTGAAGATCTCTGAGCTGATTGAAACCGTGATCTTTGTGCTTCGCAAG
AAACAAAACCAGGTGTCCAAGCTGCACATCTTTCATCACTTCTCCACGGT
AACGCTGGTCTACGCACTGATCAACTTCAACGAAAATGGTTCTGCTGCTT
ACTTCTGCGTGTTCTTGAATTCTATCGTTCACGTTATCATGTACTCATAC
TACTTTGAGGCGGCAGTGGCGGATAAGACCTTGGTGCAGGCCCTAACTCC
GGTGAAGAAGTGCATCACAGTGATTCAGATGACGCAGTTCGTTCTATATC
CTCACGCAGGTTGCTTTCCAGCTGGTATTGTGCGGCATGCCGCCCTTAGT
GCTTCTCTACTTCACCACCGTCATTCTTGGCATGTTCTACGGCTTTTACG
ACTTCTATAATAGTGCCTATCAAGCCTCGCAGCGGCGCAAGAGTCAGACC
CCTCAGTCAGACTCAAAAAAGGAAAGCTTTTCTAGACCATTCGTTTGGCG
CGCGGGCCCGAGTT
FMO01760.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30008-RA | 965 | CG30008-RA | 99..900 | 19..821 | 3900 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9890744..9891076 | 488..821 | 1575 | 98.8 | Plus |
| 2R | 25286936 | 2R | 9890438..9890688 | 240..490 | 1240 | 99.6 | Plus |
| 2R | 25286936 | 2R | 9890052..9890160 | 39..147 | 530 | 99.1 | Plus |
| 2R | 25286936 | 2R | 9890287..9890382 | 148..243 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:51:19 has no hits.
FMO01760.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:55:58 Download gff for
FMO01760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30008-RA | 77..886 | 16..828 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:01 Download gff for
FMO01760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30008-RA | 97..906 | 16..828 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:09 Download gff for
FMO01760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30008-RA | 97..906 | 16..828 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:09 Download gff for
FMO01760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9890440..9890686 | 242..488 | 99 | -> | Plus |
| 2R | 9890745..9891082 | 489..828 | 97 | | Plus |
| 2R | 9889974..9889995 | 16..38 | 91 | -> | Plus |
| 2R | 9890052..9890160 | 39..147 | 99 | -> | Plus |
| 2R | 9890287..9890380 | 148..241 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:01 Download gff for
FMO01760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5777479..5777500 | 16..38 | 91 | -> | Plus |
| arm_2R | 5777557..5777665 | 39..147 | 99 | -> | Plus |
| arm_2R | 5777792..5777885 | 148..241 | 100 | -> | Plus |
| arm_2R | 5777945..5778191 | 242..488 | 99 | -> | Plus |
| arm_2R | 5778250..5778587 | 489..828 | 97 | | Plus |
