FMO01761.5prime Sequence
781 bp (781 high quality bases) assembled on 2008-04-17
> FMO01761.5prime
AACCAAGTTATCAGTCGACATGGAAAATAATTTCTACTGGCGCAACAAGG
TGGCGGTTGTCACTGGAGCCTCCGTGGGCATTGGAGCTACCACAGCTATA
GAACTGGCCAATGCCGGAATGGTAGTTGTGGGCCTAGCTCGTCGAGTGGA
ACTCATTGAGGCACTCAGGGATCAAGTGACCGGCGTTGGAAAGATTTTTG
CCCGGCAATGTGACCTCAATGATGAAGAGCAGTTGGCCAGTGCTTTTAAC
TGGATTCGTGAAAAATTCCAGGCCATTCATGTGCTCATCTGCAACGCTGG
CATCCTGAAGGCCAACTTCCTGAGCGAATCCCCCACCAAGGACATCAAGG
AACTGTTCGACACGAATGTGGTGGCCACCGCCAGCTGCCTGCGGGAGGCA
CTGAAACACATGGCTGCGGTCAAGGTTCGCGGTCACATTGTGGTCATGAA
CAGCGTGCTTGGCCATCGGATTCCGGAAGTGCCGGTGCCCTTATTCAGCG
TTTATCCGGCCACGAAGCATGCAATTACGGCCCTCTGCCAAACGGTGCGC
CAGGAAATACATTTTCTCAAATTAAATATTAAATTAACGAGCATTTGCCC
GGGCATGGTAGACACGGATTTCCTTAGTGTTTACTCGCAGGCGGTAGCCG
AGCTGCCCAAACTGCAGGCAAGGGATGTGGCCAAGGCCGTGTTGTATGCG
CTGAACACTCCCGATGGCGTCCAGGTGGAGGACATCATCCTGCAGCAGAT
GCGGAAGGTCGATGCAAGCTTTCTAGACCAT
FMO01761.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rdhB-RB | 1103 | CG7077-RB | 217..961 | 19..763 | 3725 | 100 | Plus |
| rdhB-RA | 971 | CG7077-RA | 85..829 | 19..763 | 3725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22355948..22356122 | 589..763 | 875 | 100 | Plus |
| 3R | 32079331 | 3R | 22352529..22352696 | 159..326 | 840 | 100 | Plus |
| 3R | 32079331 | 3R | 22352329..22352471 | 19..161 | 715 | 100 | Plus |
| 3R | 32079331 | 3R | 22355687..22355827 | 449..589 | 705 | 100 | Plus |
| 3R | 32079331 | 3R | 22352748..22352875 | 326..453 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:33:37 has no hits.
FMO01761.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:56:15 Download gff for
FMO01761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7077-RA | 78..838 | 10..772 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:33 Download gff for
FMO01761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdhB-RA | 76..836 | 10..772 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:55 Download gff for
FMO01761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdhB-RA | 76..836 | 10..772 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:55 Download gff for
FMO01761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22352749..22352875 | 327..453 | 100 | -> | Plus |
| 3R | 22355692..22355827 | 454..589 | 100 | -> | Plus |
| 3R | 22355949..22356129 | 590..772 | 97 | | Plus |
| 3R | 22352320..22352470 | 10..160 | 97 | -> | Plus |
| 3R | 22352531..22352696 | 161..326 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:33 Download gff for
FMO01761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18178042..18178192 | 10..160 | 97 | -> | Plus |
| arm_3R | 18178253..18178418 | 161..326 | 100 | -> | Plus |
| arm_3R | 18178471..18178597 | 327..453 | 100 | -> | Plus |
| arm_3R | 18181414..18181549 | 454..589 | 100 | -> | Plus |
| arm_3R | 18181671..18181851 | 590..772 | 97 | | Plus |
