FMO01766.5prime Sequence
1057 bp (967 high quality bases) assembled on 2008-04-17
> FMO01766.5prime
CAGTCGACATGTCCGTAAACTTGGACGGTTCTGAAGAAAAGATGGAGCTG
AAAAAGCATGTGCCGTACATCCTGAACGGGGAACTGTATCGCATCGAGAA
GCAGGTGGGCGACAATGTTACGGTCAAGTGCTGCTACTGTCCGCCGGATC
GGATTTATCGCGGCAGTGTCCGCTCCACCGGGAACTTTCACATGCACATC
AAGAGACGTCATAGTTCCTTGTTGGGCAAACTCCATGAAATGAAGGTGGC
TGCACTGGAAGAACGCCGTGATCGGATCATGAAAAACCGACGCTTTGCCA
AGTCGCGCAAGAAGGCACCAGTTGCGGTTGCAGCCACAAGTACAGCTGCG
CAGAGCGATTCCGGGGTGTTCGTGGACATGCAAGCTGCTGTTCCGTCTGG
AAACGAAAGCCACGAGCTGAAAATCAAAACGGTTTTTCAGCGCCACAAGC
AAGAGCAGGAGGGAGCTACCCGCAAGCTCGAAGATTCCACTTCAGATAAA
GCTAATCTACCAAATATCCCTAAGAACTTGGGAATTGTCGTTCAGAACGT
CTCAAACATCTCGGTGGAAACACTGCCCGGCGGTTCGACTCCTGCCAGTG
TCTCCTTTCTGGGTCGTCCTGTCAAGCCTGAGCAGGGTAGTGGTCCGTCA
TTCCTGGCTGATCAGCCGGCTGCCATAGATTTGAGCCAGGTTCCACCAGT
GCAGGGCGAGAGTAAATCCAGTGGATCGCTGGCTTCATCGATGGAGGACG
TCTCTATGGAGTACTCACGCTCCCAGGCCCTCTCACAATCGCTATCCATG
GCCCACTTCTTGGAGCATCCTCAGCGAGATGTGCTGCAGCGCCTGGAGCG
CTCGATGGCCCAATAAGTCAAGAGTTGCACTGCCGCAACCGCATCGAGCA
CATCCGCATGTTGTTGGAGCAGGCAAGATTCAAGTTTACTAATCCGAATT
TTCAGTTTGAGACGAATCTGGCAAGCTATCTAGACCATTCGGTTGGCGCG
CGGGCCCAAGTTAGTGTCATAATCATAATCTCATCATATTCATATCACAC
TAGCCTA
FMO01766.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stil-RA | 1171 | CG8592-RA | 83..1045 | 9..970 | 4625 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12571335..12571757 | 549..970 | 1870 | 96.7 | Plus |
| 2R | 25286936 | 2R | 12570718..12570992 | 202..476 | 1375 | 100 | Plus |
| 2R | 25286936 | 2R | 12570449..12570643 | 9..203 | 975 | 100 | Plus |
| 2R | 25286936 | 2R | 12571143..12571218 | 475..550 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:08:07 has no hits.
FMO01766.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:56:20 Download gff for
FMO01766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8592-RA | 94..1060 | 9..975 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:29 Download gff for
FMO01766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stil-RA | 83..1049 | 9..975 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:20 Download gff for
FMO01766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stil-RA | 83..1049 | 9..975 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:20 Download gff for
FMO01766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12570449..12570643 | 9..203 | 100 | -> | Plus |
| 2R | 12570720..12570992 | 204..476 | 100 | -> | Plus |
| 2R | 12571145..12571216 | 477..548 | 100 | -> | Plus |
| 2R | 12571335..12571757 | 549..970 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:29 Download gff for
FMO01766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8457954..8458148 | 9..203 | 100 | -> | Plus |
| arm_2R | 8458225..8458497 | 204..476 | 100 | -> | Plus |
| arm_2R | 8458650..8458721 | 477..548 | 100 | -> | Plus |
| arm_2R | 8458840..8459262 | 549..970 | 97 | == | Plus |
