FMO01779.5prime Sequence
958 bp (958 high quality bases) assembled on 2008-04-17
> FMO01779.5prime
CAGTCGACATGAGAGAAAAGTGGAAAGCTCTGTTGCTATTGCTTCAGCTG
CTTGCTCATTTGGAATCGGGTCAAGCTATTTGGTTTCCCTGGTACTTTCA
GCGCTACGGACTAGCCCCACATTCATCCCGCCATGGCGGAGGTCATAAGA
ACAACACAGACCCCGGGTCAACCTGCCCACCAGGCTACGAAATAAAGGCA
TCAGTGGCAGGATTGTCTGGCGGAACGGCCGGATGTGAACGCGTAGTTGG
ATCGAAAGCAGGACGCCTTTGCGACGATAATCCCGTGTTGATGCAACTGG
CGCGTCTCTATGTGGTGAGTCCTGAGAGGATTGTCCTGCTCCTGGCGCAG
CCATCACTAACCGAGTCCTGCGCCGAGATCACCGATGTGCTGGACAATAT
TCGGAACTCCATGCGCAATTGTGTCTTGGCACCGGATAACATATACGGAA
GACTAGCTGATGGACTGAGCTACTTCCAATCGGAGGTCTGCGTTGGTGGC
GATGGCAGCAACAGGAAGCGATGCACTGGACTCCAGGAGTCGCACAACTG
CCTCAAGGAACTCCGGACGGACATGATCGAGTGCGAGGCACCGGCTGATT
GGTACGAACGCAGGAATGCCAGCAAGGTGTGCCACATATTCAACGATGTT
CTCGACTGTTACTATACGAGGGCAGCCTTGTTGTGCGGACTTGAGGTTGC
CAGGCAACTAAGGTCCTTCGCAGGCGACAGCATGGGCAGAGCCATGATCC
ACAAGTGCGAGGTCAGCAAAAGGCTACCCCGGGGTTGATAATGCCATGCC
CGTCACGCAAGTAGTGGGGCTAGCTTAAAGGTCATCATGGTTAGGTGCAC
TTATTTCATGGATTTTCGTTATTTATTTTTCAGACATTAAATATATTTTT
GGGATTATTGGTATATGCAAGCTTTCTAGACCATTCGTTTGGCGGCGCGG
GCCCAGGT
FMO01779.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4891-RA | 948 | CG4891-RA | 40..945 | 9..916 | 4445 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16095036..16095941 | 9..916 | 4345 | 99.6 | Plus |
Blast to na_te.dros performed 2014-11-28 20:17:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 1553..1591 | 23..63 | 119 | 80.5 | Plus |
| mdg3 | 5519 | mdg3 DMMDG3 5519bp Derived from X95908 (e990667) (Rel. 49, Last updated, Version 3). | 3121..3185 | 874..935 | 110 | 67.7 | Plus |
FMO01779.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:25:42 Download gff for
FMO01779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4891-RA | 28..936 | 9..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:54 Download gff for
FMO01779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4891-RA | 40..948 | 9..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:48 Download gff for
FMO01779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4891-RA | 40..948 | 9..920 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:48 Download gff for
FMO01779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16095036..16095947 | 9..921 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:54 Download gff for
FMO01779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16095036..16095947 | 9..921 | 99 | <- | Plus |
