FMO01781.5prime Sequence
985 bp (985 high quality bases) assembled on 2008-04-17
> FMO01781.5prime
ATAATACAAAGTTATCAGTCGACATGTCCAGAGGCGGTGCTATCGACTTG
ACCGGCCTATCCGAGGAGCAGGTGAGCGAGTGGCTCCAAAGTTTCGACAC
GGTTCTCTGCGACGGCGACGGCACCATATGGCAGGATGACACGGCCATCG
CTGGTGCTCCGGATGTGGTGAATGCCCTGCAGGATCGATTTGACAAAAAA
GTTTACCTGATTACCAACAATGGCCTAAAGACGCGACAGGAGCTCTTTGA
GCGCTCCCAGCGCCTTGGCTTCCATTTACCCAGCGACCGACACATCATTT
CGCCCACGGCGGCCATCGCCGACTATCTGGTTGGGAGTCCGAAGTTCGAC
AGGACCCGGCACAAGGTCTATGTGGTGGGCAATGCGGCCATTGCGCGGGA
ATTAAGGCAGCGCGGAATCGACAGCTACGGAGCCGGCGGAACAGATGAAC
TGCCTCCGGGCGACAAATGGCCGGACTTTGTGACACGCGAGTTTGGGAAC
CCAGAGGCGGCGAAGGACGTGGGTGCCGTGGTGGTCGGCTGGGATGAGTA
CTTTAGCTACTGCAAGATGGCGCGCGCCTGTCACATCCTCTGCAGTAATC
CCGACGCCGCCTTTTTGGTCACCAACCGGGATGCCGTGCACAAGTATCCA
TCCTTTTGTATCCCCGGCACTGGGGCCTTTGTGGCCGGAATCGAGGCATG
TTCGGAGCGTGAAGCCCTCGAGATGGGCAAGCCAAATCCATTGGTCCTTG
AGCCCTTTATCAAGGCCGAGGGACTACGTACCGAGCGAACGCTTATGATT
GGTGACTGCCTCAAAATAGATGTCGGTTTCGCCAGCAATTGTGGCATGCT
ATCGCTTCTGGTGGGCACGGGTCGTTACAATAATCTCTCGGATGTCCGGC
TGGAAAAGACAGGCTGCCCCAGCCAGACTTTTATCTGCCCCGTCTGGGCG
ATCTGCTGAACATTTTGGCAAGCTTTCTAGACCAT
FMO01781.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5577-RB | 2162 | CG5577-RB | 45..989 | 24..967 | 4700 | 99.9 | Plus |
| CG5577-RA | 1021 | CG5577-RA | 45..989 | 24..967 | 4700 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17840036..17840724 | 808..120 | 3445 | 100 | Minus |
| 3L | 28110227 | 3L | 17839823..17839983 | 967..808 | 755 | 99.4 | Minus |
| 3L | 28110227 | 3L | 17841286..17841383 | 121..24 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:23:02 has no hits.
FMO01781.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:56:29 Download gff for
FMO01781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5577-RA | 16..971 | 17..973 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:17 Download gff for
FMO01781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5577-RA | 39..994 | 17..973 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:34 Download gff for
FMO01781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5577-RA | 39..994 | 17..973 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:34 Download gff for
FMO01781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17839818..17839982 | 809..973 | 97 | <- | Minus |
| 3L | 17840036..17840723 | 121..808 | 100 | <- | Minus |
| 3L | 17841287..17841389 | 17..120 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:17 Download gff for
FMO01781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17832918..17833082 | 809..973 | 97 | <- | Minus |
| arm_3L | 17833136..17833823 | 121..808 | 100 | <- | Minus |
| arm_3L | 17834387..17834489 | 17..120 | 97 | | Minus |
