FMO01786.5prime Sequence
689 bp (689 high quality bases) assembled on 2008-04-17
> FMO01786.5prime
AAAAACCCAAGTTATCAGTCGACATGGTGGCCTCGGCGCAGCGCGGGGAA
CGAGAGTGTCACGTTGTGGTGCTCCTTGAAGACGATATGGTCGAGTGGGA
TGAAGAGTTTCCGCCTCAGATGGGCGAGGAGTATTGTCAGACCGTGCACA
GCACTGCCATGCACCGATTCTTCAAGTACATCGAGAACCGCGATGTGGCC
AAACAGGTGATGAAGGATCGCGGTCTGAAGAAGATACGCTGTGGCATAGA
GGGATACCCCACCCACAAAGAGAAGATCCGAAGGCGTCCCGGTGGACGGG
CTGAAGTCATCTACAGCTATGTGCAGCGACCTTTCATCCACATGTCCTGG
GAGAAGGAGGAAGCAAAGAGTCGCTATGTTGATTTCCAATGTGTAAAATC
CAAGTCTGTAACGAATCTAGCGGAAGCAAATGCAGATCCGCCACTGGAAT
TGGACGCAAGTGGAAATCCGATTCCCCCTATAGCAGTGGCTAATCCGCAT
CCCAATAACGCTGAGCTCGCTGCCGGTATGGCCGTCGCACCCGCAGCTAT
AGGCGTGGCTGGTCCAGCAGTCGTGGTAGCCGTCGACGAGGCGGCCGGGG
GCGTTGTAATGCTCAACGAGTTGGACCAGGCAGCGATCGCTGTTGCCGTC
GGAATAGTTGATGAAAATATGGCAAGCTTTCTAGACCAT
FMO01786.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mri-RE | 1736 | CG1216-RE | 964..1612 | 23..671 | 3215 | 99.7 | Plus |
| mri-RA | 1739 | CG1216-RA | 967..1615 | 23..671 | 3215 | 99.7 | Plus |
| mri-RB | 1647 | CG1216-RB | 875..1523 | 23..671 | 3215 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 201441..201761 | 142..462 | 1590 | 99.7 | Plus |
| 3L | 28110227 | 3L | 201817..202028 | 460..671 | 1060 | 100 | Plus |
| 3L | 28110227 | 3L | 201250..201368 | 23..141 | 580 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:17:26 has no hits.
FMO01786.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:56:33 Download gff for
FMO01786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1216-RC | 130..778 | 23..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:56 Download gff for
FMO01786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mri-RB | 875..1523 | 23..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:52 Download gff for
FMO01786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mri-RB | 875..1523 | 23..671 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:52 Download gff for
FMO01786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 201441..201758 | 142..459 | 99 | -> | Plus |
| 3L | 201817..202028 | 460..671 | 100 | | Plus |
| 3L | 201250..201368 | 23..141 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:56 Download gff for
FMO01786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 201250..201368 | 23..141 | 99 | -> | Plus |
| arm_3L | 201441..201758 | 142..459 | 99 | -> | Plus |
| arm_3L | 201817..202028 | 460..671 | 100 | | Plus |
