FMO01788.5prime Sequence
878 bp (878 high quality bases) assembled on 2008-04-17
> FMO01788.5prime
CAGTCGACATGCTTCACAGCGGAAAACTTGTTCAGCTTTTGACTCTGGCT
TGGCTAGGCGCATTGACGATGGCAGAATTTCGATGCGGTCGTCTGGATGA
AAAGCTATTGTACACCACCAACGAGCAGGCGGAACCCTCCGAGAATCCCT
GGGTGGGCATTCTGCTGGAGGATCAGGGAAATCGGTACGAGAATACAAGG
TGCTCCGTAGTTATTATTAACGAGCTGCACATCCTCAGTACTGCGACGTG
CGTAAAGCGCTTTAGCCAACGATCCGGAGACACCAAAGCCGTGGCAATGT
TGGGCGTTTGGGACGAGACTGACTCCCCGGAGGAGGAGCTGTCGTGCAAC
GACAAGGACTTCTGTGTGCCGGGGCCTGAGCTGTACAAGGTGGTGGAGAT
CAAGGTCCATCCGCAAACGGACAAGGACACGGGGGACAACGACTTGGCCA
TCCTTCGGCTGGAAAAACCAGTCGAGTGGACCAACTGGGTTCAGCCGATC
TGCTTGGAGGGCACTTCGGAACCGGAAACGCTGACCAATCGCAACCTGCA
CTACACCGGATTCAACCATATGGCCTCGGAGAAGGGCAAGGGGTTGGCCA
TGACAGTATCTACTCAAAAGTGCAAACAATTGACATCCTCCAGCGTCCTA
GTACCGGTGAACCAGCTGTGCGGCTATCCCGTGAAGAGGACCAAGTTCTA
TCCGGGAGCACCACTGATGGACATCGATGTGCGAGATGAGAAGCCGCACA
ACTTCTACCTGGTGGGCATTCTGGTCCGGAACGTAGATGCCGGACAGGCT
ACCACTCAAGTCTATCAGAATGTCCGACGCGCCCGCTCCTGGATAATGGA
AAATTTGAAGGCAAGCTTTCTAGACCAT
FMO01788.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31200-RA | 915 | CG31200-RA | 16..867 | 9..860 | 4260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20744282..20744965 | 860..177 | 3420 | 100 | Minus |
| 3R | 32079331 | 3R | 20745086..20745204 | 178..60 | 595 | 100 | Minus |
| 3R | 32079331 | 3R | 20745272..20745323 | 60..9 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:53:12 has no hits.
FMO01788.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:56:36 Download gff for
FMO01788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31200-RA | 9..867 | 1..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:58 Download gff for
FMO01788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31200-RA | 9..867 | 1..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:43:23 Download gff for
FMO01788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31200-RA | 9..867 | 1..860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:43:23 Download gff for
FMO01788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20744282..20744964 | 178..860 | 100 | <- | Minus |
| 3R | 20745087..20745203 | 61..177 | 100 | <- | Minus |
| 3R | 20745272..20745330 | 1..60 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:58 Download gff for
FMO01788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16570004..16570686 | 178..860 | 100 | <- | Minus |
| arm_3R | 16570809..16570925 | 61..177 | 100 | <- | Minus |
| arm_3R | 16570994..16571052 | 1..60 | 93 | | Minus |
