FMO01791.5prime Sequence
914 bp (914 high quality bases) assembled on 2008-04-17
> FMO01791.5prime
TATAAAACGAAGTTATCAGTCGACATGAATCTCTATTTGTTGTGTGTTTT
AATTTTAAGCGGTGGCAGCCTCTTGTCTACTGCTCAAAGCAATAAATTGG
ATCTAGTCTATAAGAAAGCTGAAAGCATGGTTTCCAGTTTAAAGATCAGG
CTGGAAGAGCTAAAACAGAGCTACAAGGAAATCACAGAAGAAAGAGGCAG
TCATGAGACAATTAACCCATCCTCCTGTCTAGCTGCCGGAATCAACAGTA
ATGGCATCCATGTTATTGAAGTTCCGGGTCTGGAACCTTTTCCGGTTTAT
TGTGACACTCGGCTGGCGGGATCTGGATGGACTGTAATTCAGCGACGACA
GGATGGCAGTGAAAACTTCTATCGCTGTTGGGAGGAGTATAGCCAAGGAT
TTGGGGAGCTTAGCGGAGAATTCTTTATGGGTCTGGAAAAGCTACACTTC
CTAACAACCGCGGAGCCTTACGAGCTGTTTGTCTATATGGAAGATTTCAA
TGGAGTGGTACATGATGCTCGATACGAGGATTTTGCCATTGGGAATGCAT
CAGCGTCCTATGCGCTATCTGTTTTGGGTAAATACTCGGGAGACGCCGGT
GATTCGTTAAGGTACCACAAGGGAATGCCCTTCTCCACATTCGATCACGA
TGATACGGGTCACGGATGCGCCAGGATTTATGTGGGGGCCTGGTGGTATG
ATCAGTGCCAGAGGAGCAACCTCAATGGCCAATATTTGGAAGGAGGTCGA
TTCGAGCCGAAGATGTCGGGTCGTGGAATCACCTGGATGAGCTGGCGTGG
CTACGACTACGGCTACAAATTCGTACAATGATGATCAGACCCAAGTGTTC
CAACAACCTACGAAGGCAGGGCATGCAAAATGCCTTAAACGCCCATGCAA
GCTTTCTAGACCAT
FMO01791.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30281-RA | 1007 | CG30281-RA | 14..887 | 24..896 | 4345 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22115325..22115832 | 209..716 | 2540 | 100 | Plus |
| 2R | 25286936 | 2R | 22115887..22116069 | 715..896 | 865 | 99.5 | Plus |
| 2R | 25286936 | 2R | 22115010..22115123 | 24..137 | 570 | 100 | Plus |
| 2R | 25286936 | 2R | 22115171..22115248 | 131..208 | 375 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:23:10 has no hits.
FMO01791.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:56:39 Download gff for
FMO01791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30281-RA | 8..893 | 17..904 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:22 Download gff for
FMO01791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30281-RA | 8..893 | 17..904 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:37 Download gff for
FMO01791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30281-RA | 8..893 | 17..904 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:37 Download gff for
FMO01791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22115004..22115123 | 17..137 | 96 | -> | Plus |
| 2R | 22115178..22115248 | 138..208 | 100 | -> | Plus |
| 2R | 22115325..22115832 | 209..716 | 100 | -> | Plus |
| 2R | 22115889..22116075 | 717..904 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:22 Download gff for
FMO01791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18002509..18002628 | 17..137 | 96 | -> | Plus |
| arm_2R | 18002683..18002753 | 138..208 | 100 | -> | Plus |
| arm_2R | 18002830..18003337 | 209..716 | 100 | -> | Plus |
| arm_2R | 18003394..18003580 | 717..904 | 97 | | Plus |
