FMO01793.5prime Sequence
728 bp (728 high quality bases) assembled on 2008-04-17
> FMO01793.5prime
TTAATACCAAGTTATCAATCCACATGGCGGTGCGACCTTTTGGCCCTGGA
CCCGGCGTTTACATGCTGCCCCCCACTGTGGGCTATGATAAGCATGACAA
CCGCAAACAGCGGTTGCCGCAGTACTCTTTCGGCATGCGCACCCGTGCTC
CTGGTGAGGATCTGGGTCCTGGTCCAGGGGCCTACAAGGTGGACAAGTTG
ACTCGCTATGGCACGAGCAAGGGTTTGGAGTTCTCGATGGCGCCCAGAAC
CAATGTCATCGATAAGCGAAGCAGTCCCGGTCCGGGAGCACACGATGTTC
ATAATAGGCCATTCTTTAAGGGGGTTAATGCTCCTTCGTATTCGATGGGC
CTACGAACGGACTTTAACTTCAAGAAGGATGGTCCCGGTCCCAATGCCTA
CAAGTACGAGGTCAATGCCGTTCGTCCTGGAGTCCCGAGCTATAGCATGG
GACTACAAACAAAGATTTTGAACAAGACGAATTCTCCGGGGCCGGCTGCA
TATGGCGGTGGTGATATCAATGTCAAACTGACACGTGCTCCAATATACTC
GATGCAGCCGCGCACCACTATTCCGGGCGAGAATGTCGGACCTGGACCCA
ACTACTACGACCTCATGTACTATCGTCCTGGCAAGAGTGGACCGGGCTAC
TCCTTTGGTGTGCGCCACCACCAGTTCGCTCCGCCTATGATAGTTAGATG
TGACAATATGGCAAGCTTTCTAGACCAT
FMO01793.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:55:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10252-RA | 833 | CG10252-RA | 84..770 | 24..710 | 3405 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:55:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23695284..23695545 | 710..449 | 1280 | 99.2 | Minus |
| 3R | 32079331 | 3R | 23695859..23696083 | 266..42 | 1110 | 99.6 | Minus |
| 3R | 32079331 | 3R | 23695616..23695804 | 449..261 | 945 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:55:16 has no hits.
FMO01793.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:56:41 Download gff for
FMO01793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10252-RA | 112..803 | 16..710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:42 Download gff for
FMO01793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10252-RA | 79..770 | 16..710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:08 Download gff for
FMO01793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10252-RA | 79..770 | 16..710 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:08 Download gff for
FMO01793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23695284..23695545 | 449..710 | 99 | <- | Minus |
| 3R | 23695617..23695803 | 262..448 | 100 | <- | Minus |
| 3R | 23695864..23696082 | 43..261 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:42 Download gff for
FMO01793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19521006..19521267 | 449..710 | 99 | <- | Minus |
| arm_3R | 19521339..19521525 | 262..448 | 100 | <- | Minus |
| arm_3R | 19521586..19521804 | 43..261 | 100 | <- | Minus |
