FMO01795.5prime Sequence
775 bp (775 high quality bases) assembled on 2008-04-17
> FMO01795.5prime
TAAAATACCAAGTTATCAGTCGACATGAAGGACCTGGACGGCTCCTTGGA
CACTCTGGAGAATGCCCGCTTCAACTACGTGTATATGAAGGACATTGCTC
GCCTGGCAAAGGACTCGATCTTCTCGCATAACGAGCTGATTAGCATTGTA
ATGCTCTACCATAAGTTTGTGCTGGTCAATGGGCCGAGAGCAAAGTACAT
GACCATTCAGCAACTCTCTGCGCTGATGGAGCTCTTGTTTGAGATCGTGG
ATCGCGATCTCATTGCGACCATTGTGTATAGAATAGCCCATACACCAGGT
TCCAGGCCTCCTGACTTCTTTTCCGACAAGCATATACACTTGGAGTCCTT
TGTGCGGCTTTTCACCGTATACTTCACCAAAGATCTTCAGCTGAAAATGG
AATTCGCATTCTCGGTCTACGATAAAAGCGATTCCAAGCAGTTGAATGGC
GAGCAAGTTGGGTTCTTCGTCGGCAAGTTCTTTGAGAGCGAGGATGAAGA
CGAATCCATTGAGCTGCGCTTGGACATGAAGGAGATGCTGTTCCTCAAAT
TCGACTTGGACAAGGATACCAACATTGGGGTTGATGAGTACTACGAGGTG
GTCCGCCGACAGCCCATGCTGCTGGAGTGCTTTGGTCGCGTGTTTCCCCC
GAATCCCCAGATGGAGGTCCTTGCGCTGTGCGCCAATGTAATGTCTTGGT
TTGACGATTCGCCCAATCCCAGGATTATGATAAAACCAGACGGCGGCAAG
GCCAGCGCAAGCTTTCTAGACCCAT
FMO01795.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3565-RA | 899 | CG3565-RA | 46..782 | 20..756 | 3670 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24602517..24602913 | 20..416 | 1970 | 99.7 | Plus |
| 2R | 25286936 | 2R | 24603137..24603371 | 522..756 | 1175 | 100 | Plus |
| 2R | 25286936 | 2R | 24602968..24603077 | 414..523 | 550 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:40:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dhet\Uhu | 1658 | Dhet\Uhu DHUHUH3 1658bp AKA(S51651) Derived from X63028 (Rel. 36, Last updated, Version 7). | 755..788 | 534..567 | 107 | 79.4 | Plus |
FMO01795.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:56:30 Download gff for
FMO01795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3565-RA | 38..787 | 12..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:11 Download gff for
FMO01795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3565-RA | 38..787 | 12..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:32 Download gff for
FMO01795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3565-RA | 38..787 | 12..763 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:32 Download gff for
FMO01795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24602509..24602911 | 12..414 | 99 | -> | Plus |
| 2R | 24602969..24603076 | 415..522 | 100 | -> | Plus |
| 2R | 24603138..24603376 | 523..763 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:11 Download gff for
FMO01795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20490032..20490434 | 12..414 | 99 | -> | Plus |
| arm_2R | 20490492..20490599 | 415..522 | 100 | -> | Plus |
| arm_2R | 20490661..20490899 | 523..763 | 98 | | Plus |
