FMO01801.5prime Sequence
1178 bp (989 high quality bases) assembled on 2008-04-28
> FMO01801.5prime
CAGTCGACATGGGCACGCCTCGTCTGACCGTAGTACACGGTCTAATCCTT
CTGCTCCTTGTGGAGCTAGGTTTGACTGCGGTCAGCGATACGGAGTGGGA
CCAGTACAAGGCTAAGTACAACAAGCAGTACAGGAACAGGGACAAATACC
ACCGGGCGCTATACGAACAGAGGGTCCTGGCGGTGGAAAGCCACAACCAG
CTCTATTTGCAGGGAAAGGTTGCATTCAAGATGGGACTAAACAAGTTCTC
CGACACAGATCAGAGAATCCTCTTCAATTATCGCTCGTCGATCCCAGCGC
CGCTGGAGACGAGTACCAATGCACTTACGGAGACTGTAAACTACAAGAGG
TACGACCAGATCACCGAAGGAATCGACTGGCGGCAGTACGGCTATATATC
GCCAGTGGGAGACCAGGGCACCGAGTGCCTGAGCTGCTGGGCCTTCTCCA
CCTCGGGTGTTCTTGAGGCACATATGGCGAAGAAGTATGGAAATCTGGTT
CCCCTTTCACCCAAGCACTTGGTGGACTGTGTTCCCTATCCGAATAACGG
CTGCAGCGGTGGTTGGGTGAGCGTGGCCTTTAACTACACCAGGGACCATG
GCATCGCCACAAAGGAATCCTATCCGTACGAGCCTGTATCAGGAGAATGC
CTGTGGAAAAGCGACAGAAGTGCAGGCACATTGTCGGGCTACGTCACTCT
CGGCAACTACGATGAACGGGAACTGGCGGAGGTGGTCTACAACATTGGAC
CCGTGGCGGTGTCCATTGACCATCTCCACGAGGAATTCGATCAGTACTCC
GGTGGGAGTCCTCAGTATTCCGGCGTGCAGATCTAAGAGACAGGACCTTA
CACACTCCGTTCTTTTAGTCGGCTTTGGAACTCCATCGGAAGTGGGGAGA
CTACTGGATAATAAAGAACTCCTTATGGAACCGATTGGGGAAGAAAGTGG
CTACTTAAAGCTAGCTCGGACGCCAACACATGTGGTGGAGTGCATCCACT
CCCCATATCCCACTTATTGCAGCTTTCTAGAACATCTGTTGGCGCGCGGG
CTCAGGTAGTGTCTAATCCATAATCATAATCTAATCATATCACACTAGCC
TATGAAGTCCTGCATGACCAGTGCTTGATTCCTCACATAAACGCCCCGCG
GACCGTACGTCTGAAACAATCCGAAATG
FMO01801.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11459-RB | 1413 | CG11459-RB | 37..1046 | 9..1019 | 4790 | 98.8 | Plus |
| CG11459-RA | 1123 | CG11459-RA | 37..1046 | 9..1019 | 4790 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6026245..6027202 | 970..9 | 4610 | 99.6 | Minus |
| 3R | 32079331 | 3R | 6028003..6028575 | 391..968 | 1125 | 81.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:33:51 has no hits.
FMO01801.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:25:45 Download gff for
FMO01801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11459-RA | 30..1048 | 1..1019 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:38 Download gff for
FMO01801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11459-RA | 28..1046 | 1..1019 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:02 Download gff for
FMO01801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11459-RA | 28..1046 | 1..1019 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:02 Download gff for
FMO01801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6026200..6027211 | 1..1013 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:38 Download gff for
FMO01801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1851922..1852933 | 1..1013 | 98 | | Minus |
