FMO01805.5prime Sequence
970 bp (970 high quality bases) assembled on 2008-04-28
> FMO01805.5prime
CAGTCGACATGGGCGCTCCCAGCGACCTGATTGCATCGGATGTACTGGAT
CATTACCGCACCTATTCCCTGATTGAACTATACCTAAACGCACCCACCAA
ACTGATGGAGCAATCCTGCTTCCAGCTGGAGCCACAAATGCGTGACCTTA
TCACCGAGAAGTACTATTCCATCGATGATGTGGTGGCTCGCGAAATTCTT
GGCAAGAAGCTGTCGTCCCGCTACCGCAAGGACCTCGACGAGGTGGCCGA
GAAGACGTGCGTCAAGCTAAAATCAGTTCGCCGACAATTTGACAACGTAA
AACGCATTTTTAAGGCAGTCGAGGAAATGCCGGGCACGTTAACCAACAAC
ATCAAGCAACACTTCATCATATCCACCGATCTAGCCAAAAAGTACGCCTG
CATTGTTTTCCTGGCCTGCCTGCGTTTCGAAACCACCAAAAAAAAGTTGC
AATACCTGAGCTTCAGTGATTTGTTGACCTGCTCCCATGCCATCATGATC
TACTGGACGTATACTTACCAGCACACTGGACCGGAGTACTATGATACCGA
AATGGACAAAGAGTTTCTCTTGGACCTGCGGGAGTTGCGCTGTCTACTCG
ACAAGGAAAAGGAGATTAAGCACCTCGTCTGCATGCGCCTCAAACCCGTT
CTTCTCGAGCGCGCCTTTCACGAACTGGATGGCAACTTTCGTTCTTACTG
GCGCGCCCTGATCACCATCGCCTGCAATTTGCATCGCAATCGGGAGCTGC
GCGATCTTTTCGTCGATCTCTGTGAGAAGCTTATTGATCCTTGGCGTCAG
AATGGCTGGAACCGTGAGCAAGTGAATAAATTTTTGGCTTCCATAACGCA
AAGCGTTTTGGATCTGGAAATATCAAGGGACCAAGAACCAGATGTCTTTG
GGATCGCTATATGCAGGTCATAACGATATGCTTGGATAAAATGTATCACA
TTGCAAGCTTTCTAGACCAT
FMO01805.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fibp-RF | 1233 | CG8660-RF | 167..1112 | 8..952 | 4705 | 99.9 | Plus |
Fibp-RE | 1330 | CG8660-RE | 344..1289 | 8..952 | 4705 | 99.9 | Plus |
Fibp-RC | 1274 | CG8660-RC | 288..1233 | 8..952 | 4705 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19817231..19817503 | 280..8 | 1365 | 100 | Minus |
3L | 28110227 | 3L | 19816345..19816532 | 878..691 | 940 | 100 | Minus |
3L | 28110227 | 3L | 19816871..19817003 | 521..389 | 665 | 100 | Minus |
3L | 28110227 | 3L | 19817060..19817168 | 388..280 | 545 | 100 | Minus |
3L | 28110227 | 3L | 19816720..19816823 | 622..519 | 520 | 100 | Minus |
3L | 28110227 | 3L | 19816593..19816661 | 691..623 | 345 | 100 | Minus |
3L | 28110227 | 3L | 19816206..19816283 | 952..876 | 340 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:07:19 has no hits.
FMO01805.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:56:48 Download gff for
FMO01805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8660-RC | 460..1414 | 1..957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:46 Download gff for
FMO01805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fibp-RC | 283..1237 | 1..957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:11 Download gff for
FMO01805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fibp-RC | 283..1237 | 1..957 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:11 Download gff for
FMO01805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19816202..19816281 | 878..957 | 96 | <- | Minus |
3L | 19816346..19816531 | 692..877 | 100 | <- | Minus |
3L | 19816593..19816661 | 623..691 | 100 | <- | Minus |
3L | 19816720..19816820 | 522..622 | 100 | <- | Minus |
3L | 19816871..19817003 | 389..521 | 100 | <- | Minus |
3L | 19817060..19817167 | 281..388 | 100 | <- | Minus |
3L | 19817231..19817508 | 1..280 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:46 Download gff for
FMO01805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19809302..19809381 | 878..957 | 96 | <- | Minus |
arm_3L | 19809446..19809631 | 692..877 | 100 | <- | Minus |
arm_3L | 19809693..19809761 | 623..691 | 100 | <- | Minus |
arm_3L | 19809820..19809920 | 522..622 | 100 | <- | Minus |
arm_3L | 19809971..19810103 | 389..521 | 100 | <- | Minus |
arm_3L | 19810160..19810267 | 281..388 | 100 | <- | Minus |
arm_3L | 19810331..19810608 | 1..280 | 98 | | Minus |