Clone FMO01805 Report

Search the DGRC for FMO01805

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:18
Well:5
Vector:pMK33-CFH-BD
Associated Gene/TranscriptFibp-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01805.5prime Sequence

970 bp (970 high quality bases) assembled on 2008-04-28

> FMO01805.5prime
CAGTCGACATGGGCGCTCCCAGCGACCTGATTGCATCGGATGTACTGGAT
CATTACCGCACCTATTCCCTGATTGAACTATACCTAAACGCACCCACCAA
ACTGATGGAGCAATCCTGCTTCCAGCTGGAGCCACAAATGCGTGACCTTA
TCACCGAGAAGTACTATTCCATCGATGATGTGGTGGCTCGCGAAATTCTT
GGCAAGAAGCTGTCGTCCCGCTACCGCAAGGACCTCGACGAGGTGGCCGA
GAAGACGTGCGTCAAGCTAAAATCAGTTCGCCGACAATTTGACAACGTAA
AACGCATTTTTAAGGCAGTCGAGGAAATGCCGGGCACGTTAACCAACAAC
ATCAAGCAACACTTCATCATATCCACCGATCTAGCCAAAAAGTACGCCTG
CATTGTTTTCCTGGCCTGCCTGCGTTTCGAAACCACCAAAAAAAAGTTGC
AATACCTGAGCTTCAGTGATTTGTTGACCTGCTCCCATGCCATCATGATC
TACTGGACGTATACTTACCAGCACACTGGACCGGAGTACTATGATACCGA
AATGGACAAAGAGTTTCTCTTGGACCTGCGGGAGTTGCGCTGTCTACTCG
ACAAGGAAAAGGAGATTAAGCACCTCGTCTGCATGCGCCTCAAACCCGTT
CTTCTCGAGCGCGCCTTTCACGAACTGGATGGCAACTTTCGTTCTTACTG
GCGCGCCCTGATCACCATCGCCTGCAATTTGCATCGCAATCGGGAGCTGC
GCGATCTTTTCGTCGATCTCTGTGAGAAGCTTATTGATCCTTGGCGTCAG
AATGGCTGGAACCGTGAGCAAGTGAATAAATTTTTGGCTTCCATAACGCA
AAGCGTTTTGGATCTGGAAATATCAAGGGACCAAGAACCAGATGTCTTTG
GGATCGCTATATGCAGGTCATAACGATATGCTTGGATAAAATGTATCACA
TTGCAAGCTTTCTAGACCAT

FMO01805.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:20
Subject Length Description Subject Range Query Range Score Percent Strand
Fibp-RF 1233 CG8660-RF 167..1112 8..952 4705 99.9 Plus
Fibp-RE 1330 CG8660-RE 344..1289 8..952 4705 99.9 Plus
Fibp-RC 1274 CG8660-RC 288..1233 8..952 4705 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19817231..19817503 280..8 1365 100 Minus
3L 28110227 3L 19816345..19816532 878..691 940 100 Minus
3L 28110227 3L 19816871..19817003 521..389 665 100 Minus
3L 28110227 3L 19817060..19817168 388..280 545 100 Minus
3L 28110227 3L 19816720..19816823 622..519 520 100 Minus
3L 28110227 3L 19816593..19816661 691..623 345 100 Minus
3L 28110227 3L 19816206..19816283 952..876 340 98.7 Minus
Blast to na_te.dros performed on 2014-11-28 19:07:19 has no hits.

FMO01805.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:56:48 Download gff for FMO01805.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8660-RC 460..1414 1..957 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:46 Download gff for FMO01805.5prime
Subject Subject Range Query Range Percent Splice Strand
Fibp-RC 283..1237 1..957 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:11 Download gff for FMO01805.5prime
Subject Subject Range Query Range Percent Splice Strand
Fibp-RC 283..1237 1..957 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:11 Download gff for FMO01805.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19816202..19816281 878..957 96 <- Minus
3L 19816346..19816531 692..877 100 <- Minus
3L 19816593..19816661 623..691 100 <- Minus
3L 19816720..19816820 522..622 100 <- Minus
3L 19816871..19817003 389..521 100 <- Minus
3L 19817060..19817167 281..388 100 <- Minus
3L 19817231..19817508 1..280 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:46 Download gff for FMO01805.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19809302..19809381 878..957 96 <- Minus
arm_3L 19809446..19809631 692..877 100 <- Minus
arm_3L 19809693..19809761 623..691 100 <- Minus
arm_3L 19809820..19809920 522..622 100 <- Minus
arm_3L 19809971..19810103 389..521 100 <- Minus
arm_3L 19810160..19810267 281..388 100 <- Minus
arm_3L 19810331..19810608 1..280 98   Minus