FMO01807.5prime Sequence
1012 bp (999 high quality bases) assembled on 2008-04-28
> FMO01807.5prime
CAGTCGACATGGCTGTGTATCGTCCCCGCGGCACCCTGGCCAGGGTAATC
CACGCCAAATTCCACAACGACAACTCTCTGGAGGACATAGACACTCGGAA
GTGGTACTGCCTGAACCACGAGCTGCCGCCGAGATTCCAGTCCAAGTTCG
TGCCGCTCGAGCCGGATGCCACCACCGTGAGCTGGCTGGAGCGCACCAAG
GCGCTTTCGGCAAACATCTGGACCCACTTGTGGCACGCCCTGGCTCGCTC
AATCCTGCAGTTCTTCATGACCCAGACGGACATCAACGGGTTCCTGAAGC
GCGGCTCCATGTTCATACTGTCCGAGGAACAGTTTCGCAAGCTGCTAGTA
GCAGGCGGCTTTCAGCCTGCCAGCGGTCAAGAACCTGTCACGTTGCTGGA
TATCGGAGCCGGGGACGGTGAGATTTCGCTGCGCGTGGCCAACACCGTTT
CCGAGCTGAGCGGAAGTGCCGGGCTGCGGGTCTTCGCCACCGAGGCCAGT
TGGACCATGCGCGATCGGCTGAAGAAGCTGAACTTCAACGTAATCACCGA
GATAGACGGTCTGCAGAACCTGGAATTGATTCTGTGCCTCAACGTATTGG
ACCGCTGCTTCGATTCATTCAAGCTGCTCGAGGACATTCACCTGGCACTA
GCTCCCAATGGTCGAGCAGTTGTGGCCTTAGTACTTCCCTACATGCACTA
CGTGGAGACGAATACCTCGCATCTGCCGCTGCGCCCGCTGCTGGAGAACA
ACGGGCGACAGGCGTCGTTCGAGGAGGAGGCGGCCAGGTTTATGGAGCTG
CTGGAGAACTGTGGCTACCGCGTGGAGGCATGGACCAAGGCGCCGTACTT
GTGCGAGGGTGATCTCCACCAGTCGTTCTATTGGTTAATCGATTTAATTG
TTGTCATGTCAAGATGACATTCGCAAGCTTTTCTAGACCATTCGTTGGCG
CGCGGGCCCAGGTAGTGTCATAATCATAATCATATCATATCATATCACAA
CTAGCCTAGGGA
FMO01807.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5339-RA | 1239 | CG5339-RA | 99..1014 | 8..922 | 4525 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23897137..23897657 | 907..387 | 2605 | 100 | Minus |
| 2R | 25286936 | 2R | 23897713..23898001 | 388..100 | 1445 | 100 | Minus |
| 2R | 25286936 | 2R | 23898055..23898148 | 101..8 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:47:38 has no hits.
FMO01807.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:57:13 Download gff for
FMO01807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5339-RA | 80..1002 | 1..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:31 Download gff for
FMO01807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5339-RA | 92..1014 | 1..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:19 Download gff for
FMO01807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5339-RA | 92..1014 | 1..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:19 Download gff for
FMO01807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23897137..23897657 | 387..907 | 100 | <- | Minus |
| 2R | 23897715..23897999 | 102..386 | 100 | <- | Minus |
| 2R | 23898055..23898155 | 1..101 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:31 Download gff for
FMO01807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19785578..19785678 | 1..101 | 96 | | Minus |
| arm_2R | 19784660..19785180 | 387..907 | 100 | <- | Minus |
| arm_2R | 19785238..19785522 | 102..386 | 100 | <- | Minus |
