FMO01809.5prime Sequence
1190 bp (1042 high quality bases) assembled on 2008-04-28
> FMO01809.5prime
CAGTCGACATGGAGAAGGTTTGTCAGTTTTTCCGCAACAACTACGTGCTG
GCCAATTGCGAGGATGCCATATACAAAAAGGCATTCTCCCTGAATCTGTC
CCACTACCAAATCTCCGACGTTCCGGGCATCATAGAGAAGTGCGAGACGC
TGATGAAGCTGTTCCTCAACCAAAACAAGCTAACAAAGATTCCATCCTCC
ATTGGTAGTTTGATGCGACTTCAGGTCCTCACGTTGGACTACAATAAACT
GGACGAATTCCCGCTCTGCATCTGTCGTTTGGTCCGGCTGAAGTTTCTCA
ACATCAGCTGCAATAACATTAGTAGTTTGCCACCCGAACTGGGATACCTC
ACTCAGCTGGAGACGTTCTGGTGCAATAATACTGGGCTCCTGGAGCTGCC
CAACGAAATTCGTAACTGTGAACACCTCGAGACGCTGGGCGTACGGGGAA
ATCCCTTGAAGAAGTTGCCCGATGCCATAGGCGCTCTGTCCTCCCTGCGT
TGGCTAACAGCCGAGGGCTGCGAACTCAGCGAAGTGCCACTGACCATGGC
GTTGCTGGGAAATTTGGTGCATCTGAATCTTAAGGGGAATCGATTGCGAC
GGCTGCCCAGGATGCTGATGGCCATGCAGAAGCTGCGGTTTGCTTTTCTC
AACGAAAATTGTATTGACGAGATGCCCACGCGGTCACAACTGGAGGAGTT
GCGGACTCTTCACATGCTCAACCTGTCCAAGAATCCCATCAGCCTGCACC
GCGATCTACAGCTAATGGCTTTGCGCCAGACGAACCTTTATGTGGAGCTG
CCGTCAGATCCCGCCAATATTTGCGATGGTCTCGCCAGTCGAGCTAGCCT
CAACGCCCAGGAACAGCAGAGGATCAGGCGCGAGGAGCAGACAGGATCTA
GACTCCTCCGACTGGGCGAACAGCGTGCGACCAGCGAACTGGACACAACG
GACGAGAGTGCGCTGGAGAACAACATCGAGGATCTGAGTGTCATGCTGCC
GGAAATGTCCGCGCTTTGTCACCACCTTTGCAAGCTTTCTAGAACATTCG
TTTGGCGGCGCGGGCCCAGTTAGTGTCATATCTAATCATATCTAATCCAT
ATCCCACCTAGCTAGAGATCTGGTCTGACTATGCTTGAATCCTACACCAA
TAAACGCCCCGGGCGGGCAACGAGAGCGTTTCGTGACCGT
FMO01809.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10307-RB | 1177 | CG10307-RB | 82..1108 | 5..1029 | 5040 | 99.6 | Plus |
| CG10307-RA | 1362 | CG10307-RA | 267..1293 | 5..1029 | 5040 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21689282..21689868 | 187..773 | 2935 | 100 | Plus |
| 2R | 25286936 | 2R | 21689926..21690184 | 773..1029 | 1100 | 98.5 | Plus |
| 2R | 25286936 | 2R | 21689039..21689222 | 5..188 | 920 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:47:58 has no hits.
FMO01809.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:57:17 Download gff for
FMO01809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10307-RA | 123..1164 | 1..1038 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:37 Download gff for
FMO01809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10307-RA | 123..1164 | 1..1038 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:27 Download gff for
FMO01809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10307-RA | 262..1303 | 1..1038 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:27 Download gff for
FMO01809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21689034..21689222 | 1..188 | 98 | -> | Plus |
| 2R | 21689284..21689868 | 189..773 | 100 | -> | Plus |
| 2R | 21689927..21690184 | 774..1029 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:37 Download gff for
FMO01809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17576539..17576727 | 1..188 | 98 | -> | Plus |
| arm_2R | 17576789..17577373 | 189..773 | 100 | -> | Plus |
| arm_2R | 17577432..17577689 | 774..1029 | 98 | == | Plus |
