FMO01811.5prime Sequence
707 bp (707 high quality bases) assembled on 2008-04-28
> FMO01811.5prime
CAGTCGACATGTCTACTAATCTCTGTCCCAATGCTTCCTCCTCCGACATA
CAGCCAATACTCTACTCGTATTGGCGCAGCTCGTGCTCCTGGCGCGTGCG
CATTGCGATGAACCTGAAGGAGATACCCTACGACATCAAGCCGATCAGCC
TGATCAAATCCGGTGGCGAGCAGCACTGCAATGAGTACCGCGAGGTGAAT
CCAATGGAGCAGGTGCCCGCCCTACAGATTGATGGACACACCCTCATCGA
ATCGGTAGCCATAATGCACTACCTGGAGGAAACACGTCCCCAGCGACCAC
TCCTGCCACAGGACGTCCACAAGCGGGCCAAGGTGCGCGAAATAGTCGAG
ATCATTTGCTCTGGCATCCAGCCCCTGCAGAACCTCATCGTGCTCATCCA
TGTGGGCGAGGAGAAGAAGAAGGAGTGGGCCCAGCACTGGATTACACGAG
GCTTCCGGGCGGTTGAGAAGGCGCTGTCCACTTCGGCCGGCAAATATTGC
GTGGGCGATGAGATCTCCATGGCGGACTGCTGCCTCGTACCTCAGGTGTT
CAATGCCCGAAGATTCCACGTCGACTTGCGACCGTATCCCATAATTCTGC
GCATCGATCGCGAACTGGAGAGCAATCCGGCATTCCGGGCGGCCCATCCC
TCCAATCAACCGGACTGTCCGCCGGAGCTGCCCAACAAAGCAAGCTTTCT
AGACCAT
FMO01811.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstZ2-RA | 1062 | CG9363-RA | 30..710 | 9..689 | 3405 | 100 | Plus |
| GstZ2-RB | 2202 | CG9363-RB | 381..1018 | 52..689 | 3190 | 100 | Plus |
| GstZ2-RC | 1093 | CG9363-RC | 50..685 | 54..689 | 3180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9458203..9458534 | 562..231 | 1660 | 100 | Minus |
| 3R | 32079331 | 3R | 9458595..9458817 | 231..9 | 1115 | 100 | Minus |
| 3R | 32079331 | 3R | 9457999..9458127 | 689..561 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:51:40 has no hits.
FMO01811.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:56:44 Download gff for
FMO01811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9363-RA | 22..707 | 3..689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:14 Download gff for
FMO01811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstZ2-RA | 25..710 | 3..689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:18 Download gff for
FMO01811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstZ2-RA | 25..710 | 3..689 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:18 Download gff for
FMO01811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9457999..9458125 | 563..689 | 100 | <- | Minus |
| 3R | 9458203..9458533 | 232..562 | 100 | <- | Minus |
| 3R | 9458595..9458822 | 3..231 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:14 Download gff for
FMO01811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5283721..5283847 | 563..689 | 100 | <- | Minus |
| arm_3R | 5283925..5284255 | 232..562 | 100 | <- | Minus |
| arm_3R | 5284317..5284544 | 3..231 | 98 | | Minus |
