FMO01812.5prime Sequence
1093 bp (1051 high quality bases) assembled on 2008-04-28
> FMO01812.5prime
CAGTCGACATGTCGGGATCACTGCCAGCTACTTTCGTCAAGGGTTTCCAC
GATGAGGAGAAGGTGCGTCGTATGGAGTACCGCCAACTCGGATCCACGGG
TCTGCGAGTATCCAAAATTGCTTTGGGTGGTGCCACTCTCTCCAAGCTCT
TCTCCGATGACTTCGATCGCGAGGAGGGCATCCTCACGGTGCAGGAAGCC
ATTAGATCCGGTATCAACTACATAGACACGGCTCCCTTTTATGGCCAAGG
CAAATCGGAAGAGCTGCTTGGCCAGGCGCTCAAGGATGTGCCCCGGGAGG
CCTATTATATAGCAACTAAAGTTGCACGTTACGAGTTGGATCCAAACAAT
ATGTTCGACTATACGGCTGCCAAGGCTCGGGAGAGTGTGAAGCGTAGTCT
GGAGCTGCTCCAGTTGGACAGGGTGGACGTACTACAGGTTCATGACGTGG
ATGCGGCACCTAGTCTGGACATGGTGCTGAATGAGACCATACCCGTCCTC
GAGGAGTACGTCCAGGCGGGAAAGGCTCGATTCATCGGAGTCACCGCCTA
CGATGTGGACGTGCTGAAGGAGTGTGCCGAGCGGGGCAAAGGTCGCATCC
AGGTGGTGCTCAACTATGCCCGCTACACCCTGTTGGACAACACTTTGCTG
CGCCACATGAAGGCCTTCCAGGAGATGGGCGTGGGCGTTGTCTGTGCGGC
CGCGCACTCTCTGGGACTCCTAAGCAACGCTGGACCCCAGTCCTGGCATC
CTGGTAGTCCGGAACTCCTAGCTGTGGGCAAACGGGGAGCCGAAATCTGT
CAGAAGAGGAACGTTGAGCTTGGAAAGCTGGCCATGTACTATACAATGCA
ACTGGATGGGGCGGCCACCTTCCTCATCGGTATCCCCAACCGAAAGCTGC
TGCGGATTAACTTGGACGCGATCTTCGACGGTCTCACTTCCCACGAACAG
GAAGTGCTGCAGTATCTGCGCGAAAACGTTTTTACCAAGTCCTACAGTTG
GGGCTCCACTTTATCACGGTTAACATGTTCAAAGCAAGCTTCTAGACAAT
TCGTTGGCGCCGCGGGCCAGGTAAGTGTCTAAATCATAATCAT
FMO01812.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3397-RA | 1187 | CG3397-RA | 34..1059 | 9..1033 | 5105 | 99.9 | Plus |
| CG12224-RC | 1628 | CG12224-RC | 523..1525 | 9..1023 | 3410 | 89.2 | Plus |
| CG12224-RB | 1109 | CG12224-RB | 4..1006 | 9..1023 | 3410 | 89.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11983486..11984028 | 976..434 | 2715 | 100 | Minus |
| 3R | 32079331 | 3R | 11984078..11984508 | 439..9 | 2155 | 100 | Minus |
| 3R | 32079331 | 3R | 11981012..11981554 | 976..434 | 2070 | 92.1 | Minus |
| 3R | 32079331 | 3R | 11981604..11982021 | 439..9 | 1175 | 85.4 | Minus |
| 3R | 32079331 | 3R | 11983226..11983283 | 1033..977 | 240 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:52:05 has no hits.
FMO01812.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:57:19 Download gff for
FMO01812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3397-RA | 31..1064 | 2..1039 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:30 Download gff for
FMO01812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3397-RA | 31..1064 | 2..1039 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:29 Download gff for
FMO01812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3397-RA | 31..1064 | 2..1039 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:29 Download gff for
FMO01812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11983221..11983283 | 977..1039 | 93 | <- | Minus |
| 3R | 11983486..11984024 | 438..976 | 100 | <- | Minus |
| 3R | 11984080..11984511 | 2..437 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:30 Download gff for
FMO01812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7808943..7809005 | 977..1039 | 93 | <- | Minus |
| arm_3R | 7809208..7809746 | 438..976 | 100 | <- | Minus |
| arm_3R | 7809802..7810233 | 2..437 | 99 | | Minus |
