FMO01815.5prime Sequence
1034 bp (1034 high quality bases) assembled on 2008-04-28
> FMO01815.5prime
CAGTCGACATGAGCAGCGCGATCTTCGCCAAGATTGTCCAGCTGGGAGCA
GTATTGCTGGTTTCATTCGTCGCATGGGCGTCAGCTCAGGATTCGGATAT
AGCCAGGACGTGCACTGCCTACAAGAGAAGCGTTTGGGAGGAGACGTCCG
AGTTCAGCTTTCTGATCGAGAACGCTCCGATTATCTACAAGACCCTGGAC
AAATGCACTAGCTATGCGCCGCTCATCATCGGCGGAGGACCCGCCGTGCC
CAAGGAGTTCCCGCATGCTGCGCGCCTGGGACACAAAGATGAGAATGGCG
AGGTGGAATGGTTCTGTGGCGGAACACTTATCAGCGACAGACATGTGCTC
ACCGCAGCGCATTGCCACTACTCACCACAAGGATCAGTGAACATCGCGCG
CCTCGGGGACCTGGAATTCGACACCAACAACGACGATGCGGATCCGGAGG
ACTTCGATGTGAAGGACTTCACCGCGCACCCCGAATTTAGCTACCCGGCG
ATTTACAACGACATTTCCGTGGTACGATTGAGTCGACCCGTAACCTTCAA
CGATTACAAGCATCCGGCCTGTCTACCCTTCGACGATGGGCGATTGGGGA
CCTCCTTCATAGCCATCGGTTGGGGTCAGCTGGAGATCGTGCCCAGGACG
GAGAACAAAAAGCTACAGAAAGTGAAGCTCTACAACTATGGAACGCGCTG
CAGGATTACGGCGGATAGAAATGATGAGCTACCCGAGGGATATAATGCTA
CCACCCAACTGTGCATCGGGTCCAACGAGCACAAGGACACCTGCAACGGC
GATTCCGGCGGACCGGTGCTCATCTATCACATGGACTACCCCTGCATGTA
CCATGTGATGGGTATCACATCCATCGGAGTGGCCTGCGACACACCCGATC
TTCCCGCGATGTACACACGGGTTCACTTTCTACCTGGACTGGATTAGCAG
CAGCTGGCCAAAAATGCAGCTTTCTAGACCATTCGTTTGGCGCCGCGGGC
CCAGGTAAGTGTCATAATCATAAATCATATCATT
FMO01815.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11842-RA | 1118 | CG11842-RA | 22..978 | 9..965 | 4740 | 99.8 | Plus |
| CG11841-RA | 1076 | CG11841-RA | 756..869 | 755..868 | 225 | 80.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29053188..29053773 | 380..965 | 2835 | 99.7 | Plus |
| 3R | 32079331 | 3R | 29052852..29053122 | 109..379 | 1355 | 100 | Plus |
| 3R | 32079331 | 3R | 29052701..29052800 | 9..108 | 500 | 100 | Plus |
| 3R | 32079331 | 3R | 29051947..29052060 | 755..868 | 225 | 79.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:17:41 has no hits.
FMO01815.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:57:23 Download gff for
FMO01815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11842-RA | 16..985 | 1..973 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:02 Download gff for
FMO01815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11842-RA | 16..985 | 1..973 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:02 Download gff for
FMO01815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11842-RA | 16..985 | 1..973 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:02 Download gff for
FMO01815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29052695..29052800 | 1..108 | 96 | -> | Plus |
| 3R | 29052852..29053122 | 109..379 | 100 | -> | Plus |
| 3R | 29053188..29053773 | 380..965 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:02 Download gff for
FMO01815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24878417..24878522 | 1..108 | 96 | -> | Plus |
| arm_3R | 24878574..24878844 | 109..379 | 100 | -> | Plus |
| arm_3R | 24878910..24879495 | 380..965 | 99 | == | Plus |
