FMO01818.5prime Sequence
1056 bp (1015 high quality bases) assembled on 2008-04-28
> FMO01818.5prime
CAGTCGACATGTCATTTTCCGCCATCGGTGATTGCCAACTAATTTCGCAA
TTATACCAGTACAAGAAGCACCGCGTCATCTGCAGCGTCAAAGTTCTGCC
GACACCTGTGACCCATTTTGAGCGGGAATCCAAGAATGATTTCCATTGGA
TGACCGCGGATCGGTGGAGCCGGATTGAGTGTGGTCTATGGCGCCTGTTC
GAGAACCTGAAGCAGTGGCAGGATGCCTACCAACTGGACACCGAGCTCAT
TATCGATCACATCATCGTGCGCGTCCAGGCGACCAATAAGTCGCATCCTG
CAACGGTCGCTCTTCTGGCCGGTACGGAGTCCAGCTCCAAGGATCTCTGC
CTGGACCTACAGCTGCAGTACATAACACAAGAGGACACCACCATTGTGGA
CGTCATTCCCGCCAAGCGCGAGCTTGCCACGGAAGCAGAAACAAATGGCA
CCAGACCCACATCCCGCAAGATCCGCGTAGCAAACTCAGGATCCAAGCCA
AAAGCGGGCACACAATCGAAGCCCAAGCACATTGACGCCGACAACGAGGA
TGACAAGAGCTCCACCACGGCCAGCCAACCAACCAAGATCAAGAGCGAGC
GCAGGTCCATTTCCCAAGGAGGCGAAAAGGATAAGGCTTCTTCCAGCAGC
CCCAGTTCCTCGCAGCAGAGCAACCGCATTAAGCGATCGCACAGTCCATC
ACAGCAGAATTCCAGATCCAGCTCCGTTGAGGCCAAGCCTGCACGCCGCT
CCGGCCGATCGCCCATACGCCCGAGTCGATTCAAAAACTTCGTAGTTGGC
GAGACCAGGAGCGGCAAGAGCAGAGGACCCAAGCCCAAAGTGAAACGAGT
ATCGCCAGTGCCGGCCAAAGATTTCAAGGTGGAACACATGGACGGAGGGC
GGTTCATGCATTGCAGCGGCTGGACAGCATGCTGGACACGCCCAGCCGCG
CGAGGTTAGATTTTGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGCC
CAGGTAAGTGTCATAATCATATCATATTCATATCATATCACACTAGGCTA
GGAGAT
FMO01818.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4951-RA | 1074 | CG4951-RA | 61..1020 | 9..965 | 4725 | 99.7 | Plus |
| CG4951-RB | 1591 | CG4951-RB | 61..1019 | 9..964 | 4720 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27953498..27953949 | 508..57 | 2260 | 100 | Minus |
| 3R | 32079331 | 3R | 27953143..27953342 | 707..508 | 1000 | 100 | Minus |
| 3R | 32079331 | 3R | 27952764..27952925 | 958..799 | 710 | 98.8 | Minus |
| 3R | 32079331 | 3R | 27952993..27953085 | 799..707 | 465 | 100 | Minus |
| 3R | 32079331 | 3R | 27954002..27954052 | 59..9 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:52:23 has no hits.
FMO01818.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:57:29 Download gff for
FMO01818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4951-RB | 41..999 | 9..964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:41 Download gff for
FMO01818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4951-RA | 61..1024 | 9..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:36 Download gff for
FMO01818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4951-RA | 61..1024 | 9..970 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:36 Download gff for
FMO01818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27952752..27952924 | 800..970 | 97 | <- | Minus |
| 3R | 27952993..27953085 | 707..799 | 100 | <- | Minus |
| 3R | 27953144..27953341 | 509..706 | 100 | <- | Minus |
| 3R | 27953498..27953946 | 60..508 | 100 | <- | Minus |
| 3R | 27954002..27954052 | 9..59 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:41 Download gff for
FMO01818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23778474..23778646 | 800..970 | 97 | <- | Minus |
| arm_3R | 23778715..23778807 | 707..799 | 100 | <- | Minus |
| arm_3R | 23778866..23779063 | 509..706 | 100 | <- | Minus |
| arm_3R | 23779220..23779668 | 60..508 | 100 | <- | Minus |
| arm_3R | 23779724..23779774 | 9..59 | 100 | | Minus |
