FMO01819.5prime Sequence
988 bp (984 high quality bases) assembled on 2008-04-28
> FMO01819.5prime
CAGTCGACATGGATCTGATCATTCTCGTGGGGATTGCCGTAGCTCTTTTA
GTTGTGATCGTCACACTGTACCTGCTGCAAAAGAAAAACGCCGCCCCAGA
AACCAAGGTAGCTGCAGCTCCTCAACGTGGCGTTCCACAGCGCGCCCAGG
AGGGTGTTCCGCGTCGGGCTCAAATAGCTCGAAATCAGCGCAATCGACTG
CGCCAGAATGTTCCAGCGGCTCCAGTCGCCGCGGCAGCTGGTGCTCTTCC
GGCTGCCGGCGACTCTGACCACGAGGACGAGGGTCAGGTCGATGGTGATG
AGGCACGTGTGCCCCAGGGAGCGGTGCTGGATGAGAAAATGGGTGCTAAG
AAGCGTGCCAAGATGGAGGCCAAGGAGCAGAAGCGGCTTCAGCGGGAGCA
GGAACTGCACGATCGCGAACAGCGCAAGGTGAAGGAGGCGAAGGAGGAGG
CGGAGCGCAAGCAGCAAGAAGACCTTGAGGCAGAGGCCGAGCGCAAGCGG
GTGGATGCCGAGCGCCTGGCCAAAGAGGAACGGGAGCGCAAGGAGCACGA
GGAGTACCTGAAGATGAAGGCTGCCTTCAGTGTGGAGGAAGAGGGCTTCG
AAGAGGGCGACGCCGACGACCAGGACAACCTCCTGGCCGACTTCATTCAG
TACATTAGGGACAACAAGGTGGTGGTCCTAGAGGATCTGGCCGTGGCCTT
CAAATTAAAAGACGCAGCAGGTCATTGATCGCATCCAGAACCTGCAGCCG
ATGGCACCCTCACCGGCGTCATAGACGACCGCGGCAAGTTCATCTATGTT
TCCGAGAAGAGCTATTGGCCGTGTCCAAGTTCATAAACAACGCGGACGCG
TCTCCATCGCCGAGCTGGCCGAGAGCAGCAACAACCTGATTAACCTGACG
CTCATTTCTGCCGGCGGCGGCGAAGCCAGCTCGCAAGCTTTCTAGACCAT
TCGTTTGGCGCCGCGGGCCCAGGTAAGTGTCATAATTC
FMO01819.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5862-RA | 1090 | CG5862-RA | 82..1007 | 9..932 | 4505 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21215306..21216143 | 97..932 | 3965 | 99.3 | Plus |
| 3R | 32079331 | 3R | 21215160..21215250 | 9..99 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:07:46 has no hits.
FMO01819.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:57:30 Download gff for
FMO01819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5862-RA | 81..1014 | 1..932 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:53 Download gff for
FMO01819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5862-RA | 74..1007 | 1..932 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:25 Download gff for
FMO01819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5862-RA | 74..1007 | 1..932 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:25 Download gff for
FMO01819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21215152..21215250 | 1..99 | 96 | -> | Plus |
| 3R | 21215309..21216143 | 100..934 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:53 Download gff for
FMO01819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17040874..17040972 | 1..99 | 96 | -> | Plus |
| arm_3R | 17041031..17041865 | 100..934 | 99 | <- | Plus |
