FMO01820.5prime Sequence
871 bp (343 high quality bases) assembled on 2008-04-28
> FMO01820.5prime
CAGTCGACATGTGGAAGGTTCTACTTATTTGTGTGGTGATGAGTGCTCTG
AATGAAGAGTCATCGGGAGCAAAAACGGCTCCGACCCGCAGACGACGAGC
ATATGCCGGCGGTTACGCCGGAGGGTATGCCAGCAGTGGAGGAGGAGCCG
GTGGCTATACGGGAAGCTATAACAGTGGCGGTGGACACAGCAGCTATGTG
GGTACCGGTGGTGGTGGCGGTAGTGGCTATTACGATTACGATGACTATGG
CGGCACTTCACCCAACTTTGGCATCATCGATCCGTATCTATTCCACCAGC
AGCTGACGAAATCATATTTTTGGCCCCAAAACTTCCCCAAACAAACAAGC
TTAAAACTGGTCGGGGCACGGCTTGGCAATGGTTTATGGCTTCCCGGAAA
TGCTTTTCTTTGGCAACAAAAAACAATTTTCCCTCCCACCAACAAAATCC
CCCCTCAAAAGGCCTACCCCAAAAAATTTAGGGGGCCAAAAACGGAAAAA
AAAAAGGCCCCCCCTTAATTTCATTTCCCCCCTTGGGTCCGGGGTCGGGG
TTTGGGATGGGGTTCCCAAACACCCCCCGTTTTGCCCCCCCCTTTGCCCC
CCCTCGCGGATAATTGGGTCCCAGGGGGTTCACGAAAAGGGTTTTTTTAT
ACCCCCTACTCGGGGCCCCACCATTTTTATTATTTTTTGGGGAAGAGGAT
TTGGACTTTTCCCCCCCCCCCCCTCTCCGAAGAAGGAGAGTGTGGGGCGA
GCCCCCCCCCTAGATCTCTCCCCCCCCCCCCCACGAGAGAAGGATCTGAG
CGCGAGACACCGCGACAAAAATATTATTTTCTGTGTTATAATTAACTCTA
CTAGTGTCGGGGGCTGGGTAG
FMO01820.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17549-RD | 1159 | CG17549-RD | 176..542 | 9..381 | 1625 | 96.8 | Plus |
| CG17549-RA | 1054 | CG17549-RA | 71..437 | 9..381 | 1625 | 96.8 | Plus |
| CG17549-RE | 979 | CG17549-RE | 71..403 | 9..344 | 1560 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19388073..19388315 | 310..68 | 1215 | 100 | Minus |
| 2L | 23513712 | 2L | 19388474..19388534 | 69..9 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:52:36 has no hits.
FMO01820.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:25:47 Download gff for
FMO01820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17549-RB | 171..505 | 9..347 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:49 Download gff for
FMO01820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17549-RA | 71..419 | 9..362 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:44 Download gff for
FMO01820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17549-RA | 71..419 | 9..362 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:44 Download gff for
FMO01820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19388045..19388313 | 70..342 | 97 | <- | Minus |
| 2L | 19388474..19388534 | 9..69 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:49 Download gff for
FMO01820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19388045..19388313 | 70..342 | 97 | <- | Minus |
| arm_2L | 19388474..19388534 | 9..69 | 100 | | Minus |
