FMO01828.5prime Sequence
671 bp (671 high quality bases) assembled on 2008-04-28
> FMO01828.5prime
CAGTCGACATGCAGCAGGCGAATCTGGGCGACGGTGTGGCCACCGCCCGC
CTGCTGTCCCGATCCGACTGGGGTGCCCGGCTGCCCAAGTCCGTGGAGCA
CTTCCAGGGTCCCGCGCCCTACGTCATCATCCATCACTCGTACATGCCGG
CCGTGTGCTACTCCACTCCGGACTGCATGAAGAGCATGCGGGACATGCAG
GACTTCCATCAGCTGGAGCGCGGATGGAACGATATTGGTTATAGCTTTGG
CATCGGCGGCGATGGCATGATTTACACCGGCAGGGGATTCAATGTCATCG
GAGCTCATGCACCCAAGTACAATGACAAGAGCGTGGGCATTGTGCTGATC
GGAGATTGGAGAACCGAACTGCCGCCCAAGCAGATGCTGGATGCGGCCAA
GAACCTGATCGCCTTTGGCGTTTTCAAGGGCTACATTGACCCTGCCTACA
AGCTGCTGGGCCACCGACAGGTGCGGGATACCGAGTGTCCTGGCGGCCGC
CTGTTCGCCGAGATCTCCAGCTGGCCGCACTTTACCCACATAAACGACAC
CGAAGGCGTCAGCAGCACCACGGCGCCCGTCGTGCCCCACGTCCATCCAC
AGGCGGCAGCACCACAAAAGCCGCACCAATCCCCGCCAGCTGCGCCCAAG
GTCGCAAGCTTTCTAGACCAT
FMO01828.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PGRP-LB-RF | 1234 | CG14704-RF | 427..1073 | 7..653 | 3235 | 100 | Plus |
| PGRP-LB-RE | 925 | CG14704-RE | 118..764 | 7..653 | 3235 | 100 | Plus |
| PGRP-LB-RD | 926 | CG14704-RD | 119..765 | 7..653 | 3235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11453452..11453808 | 363..7 | 1785 | 100 | Minus |
| 3R | 32079331 | 3R | 11453010..11453299 | 653..364 | 1450 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:51:50 has no hits.
FMO01828.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:56:56 Download gff for
FMO01828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14704-RA | 318..974 | 1..660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:21 Download gff for
FMO01828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LB-RD | 115..771 | 1..660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:23 Download gff for
FMO01828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LB-RD | 115..771 | 1..660 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:23 Download gff for
FMO01828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11453452..11453812 | 1..363 | 99 | | Minus |
| 3R | 11453004..11453299 | 364..660 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:21 Download gff for
FMO01828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7278726..7279021 | 364..660 | 98 | <- | Minus |
| arm_3R | 7279174..7279534 | 1..363 | 99 | | Minus |
