FMO01831.5prime Sequence
1196 bp (988 high quality bases) assembled on 2008-04-28
> FMO01831.5prime
CAGTCGACATGAGCGCTCCAGAAGAACATAAGGAGACGCCTTTGGAGGTG
ATCCATGAGTTCATCAATGGCGTAGATGATGGGACCATACGCCGCGACCT
GGGGGAGGACTGCATCCTCAGCTTCTACAGTCGAAATGTGCGTGGCGCCA
AGGCAATCACCGGATTTTTGAGAAACCAGTTGACAATGCGCTACAAGCAC
GAGGGATTCGAGGAAGCAGCACAAATTGAGTGGGGCGACGAACTTCTGCT
GAAGGCGCGCTTCGGCAGATCGTTTGACTCGGAACGTCGTCGCATCTACG
AGGAGAAGGAGCGCACAGGCACCACTCTGCATGTGCGTCCAGAGAGCGAT
GACGAGGAGGTAAATGAAAAGTTTTCCTCAACCCTGATCACACCGCCCCG
TCCATCGAGCTACAATTTGAACTCCCTGAAGTATGTGGAGGCGTGTGGCC
TGTTGAACAAGCGTAATGAACATATCTACGGCGGCCTGGACATGGGCGAG
TCATGCGCGGTCCACCTTACTTTGGGCTATCGGAGCACCTTTCTGCCCGG
CGGTCAAGTGAGCGGCTTTGAAATCTGCCTGGCTGTCTACGATCGGGGTC
TGACAAGCCTCAAACGATCCACTCTGATTCCGCCACTGTGCAGCATTTCC
TTTGCACGACGGGCCAGCGCCCGATGTAATCCAACCACCGATGATGAGGA
GGATACCGAGGAGGATTCAACGCCGCCAACAGCGAGGCGCTGCGTGCGTC
GTACTTTATTTACAGAGGAGAACACTCAGAAAGAAGAGGATGCCGATTTC
ATACCCGTGGTGGAGCAAGAGCAGCCAGCACCGCAGAGCAGCCAGCACCG
CAGCAGGCTGAGGAGACTGGCGAGGTAGTGATCCTCGTAGATATATCCAC
AGCCTTGAAGACCACAAATTTCAGCAGCTGTACACGAGGAAACGACACAG
CACCAATGGCAACGAGTAGTGCGTAACGTGCGACGGGACAGCGATGCGTT
TCGCAAGCTTTCTTAGACCATCGTTTGGCGGCGCGGGCCCAGGTAGTGGT
CATATCATATTCTAATCTAATCATATCCACTAGCTAGGAGATCTTGGCAT
GAACTATGCTGATTCTCACAATAAAACGCCGGGGACCGACGTCGGACAAT
CCAATGAGTTCTGAGTCTATCGGGAATCATCACAGGAGTCCACAGC
FMO01831.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rux-RB | 1319 | CG4336-RB | 72..1059 | 9..989 | 4750 | 99.2 | Plus |
| rux-RA | 1420 | CG4336-RA | 173..1160 | 9..989 | 4750 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6036013..6036978 | 989..31 | 4485 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:06:48 has no hits.
FMO01831.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:57:37 Download gff for
FMO01831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4336-RA | 81..1091 | 1..1002 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:36 Download gff for
FMO01831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rux-RA | 167..1177 | 1..1002 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:03 Download gff for
FMO01831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rux-RA | 167..1177 | 1..1002 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:03 Download gff for
FMO01831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6035996..6036978 | 31..1002 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:36 Download gff for
FMO01831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5930029..5931011 | 31..1002 | 98 | <- | Minus |
