FMO01840.5prime Sequence
966 bp (966 high quality bases) assembled on 2008-04-28
> FMO01840.5prime
CAGTCGACATGTGTCCGTCAAAATTTGTTGTCTACATACTGCTGATTTCC
GTAAGCGCCAATTCGAACTCGGAATCACAGGCGGGCCAGCTGCATTCGGC
GCCCAGTCAGAGGCAGGACCGACCATCGGACTTTCAGTTCCTGGTCACTG
GTGGCTATCGACCGGATACCAACGACCTGGTCAAGTACACGGTTTCGCTG
CGCATGGGCAAGCCGAAGAAGTTCTTCGGCGATAACCACTTTTGCGCGGG
AACGATCTTCAGCGAGCGGGCCATTCTCACGGCGGCCCATTGCATGTTCA
GCAATCGGCGAAAGCTGAAGGCCAAGAAGTTGATGGTCGTTGCCGGGACG
CCAAGGAGGCTGCTCAAGAGCAGTACAACACAGATTATTGAGGCCGAGGA
GCTATTGCCGCATCCCAAGTACAAGAAGGGCAAGTCGCAGAAGTACGACA
TAGGATTGATTCTGTTGGAGGCGGATCTCAGTCTGGGTGATGCCGTTGCC
AAAATACCTCTGTACAACAAGGTTCCGGTGGCCGGGGCCCCGTGCTCCAT
CGTCGGCTGGGGCACGGTCATTCAGTTCGGACCACTGCCAGATGAGGCCA
TCAACGGCGATATGCAGATCCTGCCGGACACCTTCTGCGAGAAGCTGCTG
GGCTGGTCCAACGCTGGCATGCTCTGCGCCAATGACAAGCACGACTCCGA
TGTGGACAGCTGCCAGGGCGACTCGGGCGGGCCCCTCATCTGTGACAACA
TGGTGACGGGCATCGTGTCCTTCGGAATGGGTTGCGGCGAGCCTGATTCG
GCTGGGATCTACACCGATGTCTACCACTTCCGGGATTGGATCACCGAGAA
CTCCTGCCCCCTAGGCACACGGTCCGTGTGGACGCTGTTTCTGCTGCTGC
TGCTCCTGCTCACTGGATATCCGCAAGCTTTCTAGACCATTCGTTTGCGC
GCGGGTCCAGGTAAGT
FMO01840.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3795-RB | 1247 | CG3795-RB | 47..961 | 9..922 | 4550 | 99.9 | Plus |
| CG3795-RA | 1115 | CG3795-RA | 47..961 | 9..922 | 4550 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1709099..1709442 | 916..573 | 1720 | 100 | Minus |
| X | 23542271 | X | 1709841..1710136 | 304..9 | 1480 | 100 | Minus |
| X | 23542271 | X | 1709505..1709775 | 575..305 | 1355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:07:52 has no hits.
FMO01840.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:57:44 Download gff for
FMO01840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3795-RA | 19..946 | 1..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:55 Download gff for
FMO01840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3795-RA | 19..946 | 1..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:28 Download gff for
FMO01840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3795-RA | 38..965 | 1..928 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:28 Download gff for
FMO01840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1709088..1709439 | 576..928 | 98 | <- | Minus |
| X | 1709505..1709775 | 305..575 | 100 | <- | Minus |
| X | 1709841..1710143 | 1..304 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:55 Download gff for
FMO01840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1603121..1603472 | 576..928 | 98 | <- | Minus |
| arm_X | 1603538..1603808 | 305..575 | 100 | <- | Minus |
| arm_X | 1603874..1604176 | 1..304 | 98 | | Minus |
