FMO01842.5prime Sequence
752 bp (752 high quality bases) assembled on 2008-04-28
> FMO01842.5prime
CAGTCGACATGTCCAAGTACTTATCTGTCCTACTGCTGTCCGCGGCACTC
GTTGGAGCTGCCAAGCCGGAAGATAATGAATCGTGCTATTCCTTCGCCGG
CGGCTCCGTTTATCCCGACCAGCCGAAGGGCGACCATCAGCTGCAGTACA
CCAAGGCAGTCATTTCCAAGCCAGCTCCGCAGTTCGAGGGCACCGCCGTG
GTTAATAAGGAGATTGTGAAGCTATCATTGTCCCAGTATCTAGGGAAATA
TGTGGTGCTACTCTTCTACCCACTGGACTTCACCTTTGTATGCCCAACGG
AGATCATTGCCTTCTCCGACCGCATCGCCGAGTTCAAGAAGATCAAGACC
GAGGTGATTGGCGTCAGCGTGGACTCGCACTTCACCCACTTGGCCTGGAT
AAACACGCCGCGCAAGGAGGGCGGCCTGGGCGACGTGAAGATCCCACTGC
TCTCCGATCTAACGCATAAGATCAGCAAGGACTACGGAGTCTACTTGGAG
TCCAGCGGTCATGCGCTGCGCGGTCTCTTCATTATCGATCAGACCGGAGT
GCTGCGACAGATCACCATGAATGATTTGCCCGTGGGACGCTCTGTGGACG
AGACTATTCGTCTGGTTCAGGCCTTCCAGTATACGGACACCCATGGAGAG
GTTTGCCCAGCAGGTTGGCGGCCAGGTGCCGATACGATCGTTCCCAATCC
TGAGGAGAAGACGAAGTACTTTGCCAAGAACAACGCAAGCTTTCTAGACC
AT
FMO01842.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jafrac2-RC | 1007 | CG1274-RC | 59..785 | 8..734 | 3635 | 100 | Plus |
| Jafrac2-RB | 1178 | CG1274-RB | 230..956 | 8..734 | 3635 | 100 | Plus |
| Jafrac2-RA | 1047 | CG1274-RA | 99..825 | 8..734 | 3635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3043441..3043846 | 281..686 | 2030 | 100 | Plus |
| 3L | 28110227 | 3L | 3043051..3043205 | 8..162 | 775 | 100 | Plus |
| 3L | 28110227 | 3L | 3043272..3043389 | 163..280 | 590 | 100 | Plus |
| X | 23542271 | X | 13331215..13331420 | 246..451 | 340 | 77.7 | Plus |
| 3L | 28110227 | 3L | 3043904..3043952 | 686..734 | 245 | 100 | Plus |
| 3L | 28110227 | 3L | 26297190..26297250 | 8..68 | 245 | 93.4 | Plus |
| 3L | 28110227 | 3L | 26352859..26352919 | 8..68 | 245 | 93.4 | Plus |
| 3L | 28110227 | 3L | 26617408..26617468 | 8..68 | 245 | 93.4 | Plus |
| 3L | 28110227 | 3L | 26623291..26623351 | 8..68 | 245 | 93.4 | Plus |
| 3L | 28110227 | 3L | 27065954..27066014 | 8..68 | 245 | 93.4 | Plus |
| 3CEN | 744266 | 3CEN | 543958..544018 | 68..8 | 245 | 93.4 | Minus |
| X | 23542271 | X | 13331522..13331627 | 553..658 | 185 | 78.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:49:02 has no hits.
FMO01842.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:57:47 Download gff for
FMO01842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1274-RB | 175..905 | 1..734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:58 Download gff for
FMO01842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jafrac2-RA | 95..825 | 1..734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:59 Download gff for
FMO01842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jafrac2-RA | 95..825 | 1..734 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:59 Download gff for
FMO01842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3043042..3043205 | 1..162 | 97 | -> | Plus |
| 3L | 3043272..3043389 | 163..280 | 100 | -> | Plus |
| 3L | 3043441..3043846 | 281..686 | 100 | -> | Plus |
| 3L | 3043905..3043952 | 687..734 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:58 Download gff for
FMO01842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3043042..3043205 | 1..162 | 97 | -> | Plus |
| arm_3L | 3043272..3043389 | 163..280 | 100 | -> | Plus |
| arm_3L | 3043441..3043846 | 281..686 | 100 | -> | Plus |
| arm_3L | 3043905..3043952 | 687..734 | 100 | | Plus |
