FMO01848.5prime Sequence
572 bp (572 high quality bases) assembled on 2008-04-28
> FMO01848.5prime
CAGTCGACATGGCAGACGAAGAAGATCCATGGGGTTTCGACGACGGCGGC
GAGGAGGAGAAGGCGGCATCCACCCAGGCGGGCACTCCGGCCCCACCCTC
AAAAGCACCGAGTGTGGCATCCGATCACAAGGCTGATAGCGTCGTGGCTG
GCACTCCGGCCAACGAGGAGGCTGCTCCGGAAGAGGTAGAAGAAATCAAA
GCACCGCCGCCTCCGCCAGAAGACGATGGTTACAGGAAACCGGTGCAGCT
CTACCGCCACTGGGTCAGGCCGAAGTTTCTGCAATACAAATACATGTACA
ACTACAGAACCAACTATTACGATGATGTAATTGACTATATCGACAAAAAA
CAAACTGGAGTGGCCCGGGAAATACCAAGACCACAGACGTGGGCGGAACG
TGTCCTGCGCACACGGAATATCAGTGGCAGTGACATTGATTCGTATGCAC
CGGCAAAGAGGGACAAACAACTAATTCAAACACTGGCGGCCTCGATAAGA
ACTTATAATTACCACACCAAGGCATATATCAACCAAAGGTATGCCAGTGT
CCTTGCAAGCTTTCTAGACCAT
FMO01848.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:06:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fln-RB | 1228 | CG7445-RB | 277..822 | 9..554 | 2730 | 100 | Plus |
| fln-RA | 1028 | CG7445-RA | 77..622 | 9..554 | 2730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:06:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19990370..19990630 | 269..9 | 1305 | 100 | Minus |
| 3L | 28110227 | 3L | 19990149..19990308 | 424..265 | 800 | 100 | Minus |
| 3L | 28110227 | 3L | 19989957..19990090 | 554..421 | 670 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:06:18 has no hits.
FMO01848.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:57:52 Download gff for
FMO01848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7445-RA | 17..577 | 1..560 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:55 Download gff for
FMO01848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fln-RA | 29..589 | 1..560 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:15 Download gff for
FMO01848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fln-RA | 70..630 | 1..560 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:15 Download gff for
FMO01848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19990371..19990637 | 1..268 | 98 | | Minus |
| 3L | 19989949..19990086 | 425..560 | 97 | <- | Minus |
| 3L | 19990149..19990304 | 269..424 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:55 Download gff for
FMO01848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19983049..19983186 | 425..560 | 97 | <- | Minus |
| arm_3L | 19983249..19983404 | 269..424 | 100 | <- | Minus |
| arm_3L | 19983471..19983737 | 1..268 | 98 | | Minus |
