FMO01849.5prime Sequence
886 bp (886 high quality bases) assembled on 2008-04-28
> FMO01849.5prime
CAGTCGACATGGAGGGCAAGACAGTCATTATCACAGGCGCCAACAGCGGA
ATTGGCAAGGAGACGGCCAAGGATCTGGCTGGACGTGGAGCCCGCATCAT
CATGGCCTGCAGGAACCTGGAGACTGCCAATGCAGTGAAGGATGAGATCG
TCAAGGAGACGAAGAACAACAAGATCCTAGTCAAGAAACTGGATCTGGGC
TCCCAGAAGTCCGTCCGTGAGTTCGCCGCTGACATTGTGAAGACCGAGCC
CAAGATCGATGTGCTTATCCACAATGCCGGCATGGCTCTGGCCTTCCGCG
GACAGACGAGTGAGGATGGCGTGGAGCTGACCATGGCCACCAATCACTAT
GGACCCTTCCTGCTGACGCATCTGCTCATCGATGTACTAAAGAAGAGCGC
GCCGGCTCGCATAGTCATCGTAGCCTCGGAGCTGTACCGCCTGTCGTCGG
TTAACCTGGCCAAGCTCAATCCCATCGGCACTTTCCCGGCTGCCTACTTA
TACTATGTGTCCAAGTTTGCGAACATCTACTTTGCCCGGGAGCTGGCCAA
GCGGCTGGAGGGCACCAAGGTTACAGTGAATTTCCTGCATCCCGGCATGA
TCGACTCGGGCATTTGGCGTAACGTTCCCTTCCCCCTCAACTTGCCCATG
ATGGCCATCACCAAGGGATTCTTCAAGACCACCAAGGCCGGCGCCCAGAC
CACTATCTATTTGGCCACATCCAATGAGGTGGCCAATGTGTCTGGAAAGT
ACTTCATGGACTGCAAGGAGGCCACCCTTAATGCTGCTTCCCTCGATGAG
GAGAAGGGTCTCAAGATCTGGGAGGAGTCCGTGAAGATTGTCAGCTTACG
CCCCAAGATCCCAAAATCGCAAGCTTTCTAGACCAT
FMO01849.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7675-RE | 1101 | CG7675-RE | 125..985 | 9..868 | 4250 | 99.7 | Plus |
| CG7675-RD | 1224 | CG7675-RD | 248..1108 | 9..868 | 4250 | 99.7 | Plus |
| CG7675-RC | 1082 | CG7675-RC | 106..966 | 9..868 | 4250 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18378240..18378968 | 868..141 | 3565 | 99.6 | Minus |
| 3R | 32079331 | 3R | 18379226..18379358 | 141..9 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:41:14 has no hits.
FMO01849.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:57:54 Download gff for
FMO01849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7675-RC | 94..963 | 1..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:24 Download gff for
FMO01849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7675-RA | 142..1011 | 1..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:48 Download gff for
FMO01849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7675-RC | 97..966 | 1..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:48 Download gff for
FMO01849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18379226..18379367 | 1..141 | 97 | | Minus |
| 3R | 18378240..18378967 | 142..868 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:24 Download gff for
FMO01849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14203962..14204689 | 142..868 | 99 | <- | Minus |
| arm_3R | 14204948..14205089 | 1..141 | 97 | | Minus |
