FMO01853.5prime Sequence
1078 bp (1002 high quality bases) assembled on 2008-04-28
> FMO01853.5prime
CAGTCGACATGAACAGTCCTCTCGGGATCACTGCCCTAATTTGGGGCATT
CTCTGCCTTAGCTGTCCACCTTCTTCTCAAGCCGGAAGGGAAGATTGGAC
ACCACACGAGCTTCTGGCTTACGAACAGTTGACACAACAGGATTGCGGTG
TCCTATCGAATCTGATTCCCGCCCAAAGGCTTCGACGGCGGATCACCGGC
GGCAGGAAATCTTCGCTGTTGTCCCAGCCTTGGATGGCTTTTCTCCACAT
TTCCGGTGATATAGAGATGTGCCGCTGTGGAGGCTCTCTTCTCTCAGAAC
TCTTTGTTTTGACTGCCGCGCACTGCTTCAAAATGTGTCCCCGATCTAAG
GAGATAAGAGTGTGGCTGGGAGAGCTCGACATTAGTTCCACAAGTGACTG
CGTCACCTACAATTATCAACGGGTTTGCGCACTGCCCGTGGAGGAGTTTA
CCATCGACAAGTGGATTCTTCACGAGGAGTTTAACCTCTTCTATCCCGGG
TATGATATTGCTCTGATAAAACTAAACAAGAAAGTGGTCTTTAAAGATCA
CATACGACCCATATGTCTACCCCTGACGGATGAACTCTTGGCGTTTACCT
TGCAGCTGGGACAATCCTACATGGCTGTGGGCTGGGGGAGAACGGAAAGT
CGGCGCTTCGCCAACAGTACAATGGAGGTCCATATAAACACTGAGAAGTG
CACCGACGGCAGGGATACTTCCTTCCTTTGCGCCAATGGAGATTATGTGG
ACACGTGCACTGGGGACTCCGGTGGACCGCTCATATGGAAGACCACGTTG
TTTGGCAAGGCTCGAACCGTACAATTGGGTGTGCTCAGCACTGGAAGCCA
AAACTGCGGTGCTGGTCAGAAGGCCTACTACATGGATGTACCCACCTATG
TGCCCTGGATACTCGCCAAGATGGCAGAATTATCGGATTTTAAGGTAGTT
TGCTTAGGGCAAGCTTTCTAGACCCATTCGTTTGGCGCGCGGGCTCCAGG
TAAGTGGTCATATCATAATCATATTCATATTCATAATTCACACCTAGCCT
AGGAAATTCCTGGTCATGACTAAGTGCT
FMO01853.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1773-RA | 1123 | CG1773-RA | 25..976 | 8..958 | 4675 | 99.5 | Plus |
| CG30002-RB | 1572 | CG30002-RB | 23..960 | 8..944 | 3315 | 90.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9707019..9707417 | 545..943 | 1965 | 99.5 | Plus |
| 2R | 25286936 | 2R | 9706291..9706583 | 8..300 | 1465 | 100 | Plus |
| 2R | 25286936 | 2R | 9705135..9705528 | 545..938 | 1445 | 91.1 | Plus |
| 2R | 25286936 | 2R | 9706755..9706948 | 353..546 | 970 | 100 | Plus |
| 2R | 25286936 | 2R | 9704871..9705064 | 353..546 | 835 | 95.4 | Plus |
| 2R | 25286936 | 2R | 9704406..9704698 | 8..300 | 775 | 84.3 | Plus |
| 2R | 25286936 | 2R | 9704755..9704807 | 301..353 | 265 | 100 | Plus |
| 2R | 25286936 | 2R | 9706640..9706692 | 301..353 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:17:51 has no hits.
FMO01853.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:57:58 Download gff for
FMO01853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1773-RA | 2..962 | 4..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:06 Download gff for
FMO01853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1773-RA | 15..979 | 1..962 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:10 Download gff for
FMO01853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1773-RA | 15..979 | 1..962 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:10 Download gff for
FMO01853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9707021..9707417 | 547..943 | 99 | == | Plus |
| 2R | 9706281..9706583 | 1..300 | 98 | -> | Plus |
| 2R | 9706640..9706691 | 301..352 | 100 | -> | Plus |
| 2R | 9706755..9706948 | 353..546 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:06 Download gff for
FMO01853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5593786..5594088 | 1..300 | 98 | -> | Plus |
| arm_2R | 5594145..5594196 | 301..352 | 100 | -> | Plus |
| arm_2R | 5594260..5594453 | 353..546 | 100 | -> | Plus |
| arm_2R | 5594526..5594922 | 547..943 | 99 | == | Plus |
