FMO01860.5prime Sequence
820 bp (820 high quality bases) assembled on 2008-04-28
> FMO01860.5prime
CAGTCGACATGGCGGCCTTAATCAGGAATCTGGGTGCCCGTGCCGCAGTC
GCCGCTCTGTCGGCCAAACATGTGGTGCCCGCTGCTGGATCCACTGCTCT
TCGGATGGCCAGTACAACGCCAGTGGAGCCTAAGAAGGCGGATAAGCCCA
CTGTCCGCCAGCCGGACGCAGTCGCTCGCTCGCATCTCTCCGATTTCGGG
CGCTATGTGGCCGAGTGCCTGCCCAAGTACGTGCAGAAGGTGCAGCTGAC
CGCCGGCGATGAGCTGGAGGTGCTTATTGCGCCAGAGGGCGTGGTGCCCG
TGCTGCAGTTCCTTAAGGATCATCATCAGGCGCAGTTTACCAACCTGGTT
GACATTGCCGGCGTGGATGTGCCCTGTCGCAAGAACCGATTCGAGGTGGT
CTACAATTTGCTCTCGCTGCGCTACAATTCGCGCATCCGCGTTAAGACCT
ACACCGATGAGCTGACTCCTCTGGACTCCGCCTGCGAGGTGCATAAGGCG
GCCAACTGGTACGAACGTGAGATCTGGGACATGTACGGCGTGTTCTTTGC
CAACCATCCCGACTTGCGCCGCATCCTGACCGATTACGGTTTTGAGGGAC
ATCCCCAGCGCCGCGACTTCCCGCTGTCCGGCTACGTAGAGCTGCGCTAC
GATGATGAGAAGAAGCGAGTCGTCTGCGAGCCCTTGGAGTTGGCCCAGGA
GTTCAGGAAGTTTGACTTGTCGGCGCCTTGGGAACAGTTCCCCAACTTCC
GCAACGCTAATCCCCCCGCCGAGGTAGTTCCGCCACAGGCTCCAGCAAGA
AGGCAAGCTTTCTAGACTAT
FMO01860.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:12:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NDUFS3-RA | 976 | CG12079-RA | 107..901 | 9..802 | 3950 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:12:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3158567..3159215 | 796..148 | 3245 | 100 | Minus |
| 3L | 28110227 | 3L | 3159274..3159349 | 147..72 | 380 | 100 | Minus |
| 3L | 28110227 | 3L | 3159409..3159472 | 72..9 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:12:45 has no hits.
FMO01860.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:57:09 Download gff for
FMO01860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12079-RA | 95..899 | 1..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:51 Download gff for
FMO01860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12079-RA | 100..904 | 1..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:04 Download gff for
FMO01860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NDUFS3-RA | 100..904 | 1..806 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:04 Download gff for
FMO01860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3159274..3159348 | 73..147 | 100 | <- | Minus |
| 3L | 3159409..3159477 | 1..72 | 94 | | Minus |
| 3L | 3158557..3159215 | 148..806 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:51 Download gff for
FMO01860.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3158557..3159215 | 148..806 | 99 | <- | Minus |
| arm_3L | 3159274..3159348 | 73..147 | 100 | <- | Minus |
| arm_3L | 3159409..3159477 | 1..72 | 94 | | Minus |
