FMO01862.5prime Sequence
695 bp (695 high quality bases) assembled on 2008-04-28
> FMO01862.5prime
CAATCGACATGGCACGAATCGTGTACGACGGCAAGTTCCATTGCGGAGGA
TCCTTACTGACGAAGGATTACGTTCTATCGGCCGCTCACTGCGTGAAGAA
ACTGCGAAAATCCAAAATCACAGTCATATTCGGCGACCACGATCAAGAGA
TCACCTCGGAGTCACAGGCCATCCAACGTGCGGTTACGGCTGTGATAAAG
CACAAGAGCTTTGACCCCGATACATACAACAACGACATTGCCCTGTTGCG
ACTTCGCAAGCCTATATCGTTTTCTAAAATTATAAAGCCAATCTGCCTAC
CGCGCTATAATTACAACCCCGCAGGTCGCATTGGAACGGTTGTCGGCTGG
GGACGGACATCCGAGGGAGGAGAACTACCATCCATAGTTAATCAAGTTAA
GGTGCCAATCATGTCCATCACGGAATGCCGAAATCAAAGATACAAAAGTA
CTCGAATTACCTCATCCATGTTGTGTGCGGGTAGGCCTTCCATGGACTCA
TGCCAGGGCGACAGTGGAGGACCGCTGTTGCTATCCAATGGCGTTAAGTA
TTTCATCGTCGGCATTGTGTCCTGGGGCGTTGGTTGCGGCCGCGAAGGAT
ATCCGGGTGTTTACTCCAGAGTGAGCAAATTCATACCGTGGATTAAGTCT
AATTTAGAAAATACCTGCCTGTGTTCAGCAAGCTTTCTAGACCAT
FMO01862.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11836-RF | 1102 | CG11836-RF | 317..985 | 9..677 | 3315 | 99.7 | Plus |
| CG11836-RE | 1076 | CG11836-RE | 291..959 | 9..677 | 3315 | 99.7 | Plus |
| CG11836-RI | 1101 | CG11836-RI | 316..984 | 9..677 | 3315 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25071810..25072127 | 9..326 | 1560 | 99.4 | Plus |
| 3R | 32079331 | 3R | 25072318..25072595 | 400..677 | 1390 | 100 | Plus |
| 3R | 32079331 | 3R | 25072185..25072266 | 323..404 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:42:43 has no hits.
FMO01862.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:58:05 Download gff for
FMO01862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11836-RC | 305..973 | 9..677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:36 Download gff for
FMO01862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11836-RI | 316..984 | 9..677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:15:46 Download gff for
FMO01862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11836-RI | 316..984 | 9..677 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:15:46 Download gff for
FMO01862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25071810..25072125 | 9..324 | 99 | -> | Plus |
| 3R | 25072187..25072263 | 325..401 | 100 | -> | Plus |
| 3R | 25072320..25072597 | 402..676 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:36 Download gff for
FMO01862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20897532..20897847 | 9..324 | 99 | -> | Plus |
| arm_3R | 20897909..20897985 | 325..401 | 100 | -> | Plus |
| arm_3R | 20898042..20898319 | 402..676 | 98 | -> | Plus |
