FMO01863.5prime Sequence
1192 bp (995 high quality bases) assembled on 2008-04-28
> FMO01863.5prime
CAGTCGACATGAGCAGCATGGATGTGAAGGAATTGGAAGTAAACAAAACC
CTGCCCTATGATCCCTCCCTGCTTAAGGTAAACATCTCGCTGCGGCAGGT
CGAGGAGATCGCTTTGACGGTGTCCCAGCGATGCCATGTCACCGGAGCCA
ACGAAATCGCCTGGGCGCTGAGGGCTCTGATGCTGACAGATCTTACCACC
TTGGCGGGCGATGATACGGCTGCCAATGTGCGGAGACTATGCCTACGCGC
CTGCTATCCCTTCGAGCCGCAGTTCTTTGACAAGTTCTTCGACCGGGCTC
TCATCCCAGAGATGCACACGGCCGCCGTTTGCGTTTATCCCGCCAGGGTA
AAGGACGCCTATTTAGCTATCCAACAGTACGACAAACTGGATAAGGTGGC
TATTGCAGCGGTGGCCACGGGATTTCCCACGGGCCAGTACGGCCTGCAGA
CCCGCCTGCAGGAGATCAGCCACGCCATTCTTGCTGGAGCCACAGAGATC
GACATTGTGATCAATCGCCAGTTGGCCCTCGTTGGCGACTGGGAGGCCAT
GTACAACGAGGTGGTCCTTATGCGCAGTGCCTGTGGACAAAGGGCTCACC
TAAAAACAATTCTGGCCATCGGGGAGCTGGGCACCATGGATAATGTTTAC
AAAGCAGCCATGGTTTGCATGATGGCCGGAGCGGATTTTATCAAGACCTC
AACGGGAAAGGAGACAGTCAACGCCACCCTGCCCGTTGGCCTGGTCATGA
TATTTGCCATTCAGGAATTCAAACGACGCACGTGCCAGATTGTGGGCCTT
AAGCCAGCCGGAGGAGTAAAGACTGTACGAGATGCGATCGCCTGGATGAC
GTTGGTCAACGAAACTCTTGGCATCCGCTGGTTGCGTCCCGAGAGGTTCC
GTTTCGGAGCCTCCGGATTGCTGGACGACATTGAACGCGTTGTGCGTCAG
GTGTTAAAAAACTCGAGGAGGATGAGCTCAGAAAATGGTGCCCGTGTCTC
GCGAAGCTGCTGCTGCGAAACTCTGCAAGGAGCTGCGAAGAATGCAGCTT
TCTTAGACATCGTTTGGGCGCGCGGCCCAGGTATTGCCTAATCTATCTAA
TCTAATCTAATTCACTAGCTAAGGGAATCTGCCTGACATGCCTGATTCCA
ATTAACGCGGCGACCTGATCGATCTGACAAATTCCGATTGAA
FMO01863.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:55:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8525-RD | 1269 | CG8525-RD | 120..1159 | 9..1042 | 4985 | 98.9 | Plus |
| CG8525-RA | 1378 | CG8525-RA | 229..1268 | 9..1042 | 4985 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:55:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12425815..12426401 | 60..646 | 2935 | 100 | Plus |
| 2R | 25286936 | 2R | 12426462..12426835 | 645..1016 | 1710 | 98.4 | Plus |
| 2R | 25286936 | 2R | 12425711..12425762 | 9..60 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:55:46 has no hits.
FMO01863.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:58:06 Download gff for
FMO01863.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8525-RA | 249..1297 | 1..1047 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:04 Download gff for
FMO01863.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8525-RA | 224..1272 | 1..1047 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:23 Download gff for
FMO01863.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8525-RA | 224..1272 | 1..1047 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:23 Download gff for
FMO01863.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12425706..12425762 | 1..60 | 95 | -> | Plus |
| 2R | 12425816..12426399 | 61..644 | 100 | -> | Plus |
| 2R | 12426462..12426869 | 645..1047 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:04 Download gff for
FMO01863.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8313211..8313267 | 1..60 | 95 | -> | Plus |
| arm_2R | 8313321..8313904 | 61..644 | 100 | -> | Plus |
| arm_2R | 8313967..8314374 | 645..1047 | 96 | | Plus |
