FMO01865.5prime Sequence
875 bp (299 high quality bases) assembled on 2008-04-28
> FMO01865.5prime
CAGTCGACATGTTGGCCTCCGCCTGGCGCAGCGTGGCCACCTCCGTGGAG
ACCCAGTTGACGGCCACCTACTTCCGAGTGCAAAAACTACGAAAAGTCGG
CTTCAGAGGCATGCACAGCACATTGGAGGACGTGCAGCTGGAGGGCATGG
AGATCAAGATCCTGCCGGCCCTGCAGGATAACTATATGTATCTGATTGTA
GACACGAAGACGCGCGAGGCGGCCGTGGTGGATCCCGTGGAGCCGGAGCT
GGTCATTAAGACGGTGCAGGAGCAGCAGCTGACCCCTCAGCAAGGTGCTG
ACCACGCCCCCATCACTGGGAACCACGCCCGGGGGCAATGAAAAAGCTGC
TCCAGCCTGGGGGAAAAAGGAACTGGAACGTGTTTGGGGGGCAATGAACC
CCCTCGGGGGCTTTGAAAAAAAAGGGTTCACCGGGACCAACCCCTTTCCC
CCTTGGGGGGTCTGCCTGGCCAGGGGTTTGCCCCCCCCGGGGCAAATAAC
CGGGCAATTTTGTGTTCCCATTTCCCGGGAAAAAGGGACGGAAAAGAGAC
CTTTTTCCCGGGGAAACCCCCCTTTCGGGGGGGGGGGGGGCCCTTTTTTC
GGGGGCCCCCCAAAAAAAAATAAAAAGGGGGTGTGAAAAAATCTTTTTCT
TTGCGGAAAAAAAAAAGGGGGTGGTGGGGCCCAAAAAACCCCCCCAAAAA
AAAATTTTCTCCCCGTCGGCGCCCCCTGAAAAACTCCTCTCCCAAATATG
AGGGGGGTGGGGCCGGCGCCCCCTCCCCTAAACTGTGTGCCCCTCTTGTG
GTGAGGAGAGAGAGAGGGCTCTCTTTCTTTTTTCACACGACACGAGAAGT
GGAGAGGAGAGAGCTCCTCTCTCTC
FMO01865.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4365-RA | 1092 | CG4365-RA | 84..500 | 9..437 | 1620 | 93.7 | Plus |
| CG4365-RC | 1231 | CG4365-RC | 308..654 | 79..437 | 1270 | 92.5 | Plus |
| CG4365-RB | 1013 | CG4365-RB | 75..421 | 79..437 | 1270 | 92.5 | Plus |
| CG4365-RC | 1231 | CG4365-RC | 109..178 | 9..78 | 350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20799141..20799383 | 77..321 | 1110 | 98.8 | Plus |
| 3L | 28110227 | 3L | 20798790..20798859 | 9..78 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:41:31 has no hits.
FMO01865.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:58:09 Download gff for
FMO01865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4365-RA | 75..439 | 1..371 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:30 Download gff for
FMO01865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4365-RA | 75..439 | 1..371 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:56 Download gff for
FMO01865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4365-RA | 75..439 | 1..371 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:56 Download gff for
FMO01865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20798781..20798859 | 1..78 | 95 | -> | Plus |
| 3L | 20799143..20799370 | 79..307 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:30 Download gff for
FMO01865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20791881..20791959 | 1..78 | 95 | -> | Plus |
| arm_3L | 20792243..20792470 | 79..307 | 99 | == | Plus |
