FMO01872.5prime Sequence
758 bp (758 high quality bases) assembled on 2008-04-28
> FMO01872.5prime
CAGTCGACATGTCCTCTCCCAGTGAATCCTCTTCAGCTTCTGAGCACGAG
GCTAGCGATGACAACGAAACTCAGAATGCCATTCGCGAAGATCTCAAAGG
AATGTCATTCGAGGAGATAATGAAACTAAAAGAGGAGCTGGGCGCCAAGG
TGTACAAAGAGGCTGTGCTCGGTAGCAAGAGTTCTAGACCCCAAAAACCA
AAGGCCAAAACCGACCTCAAGCGGCTAAACAAAAACCGACCTCGTGAAAT
GACCACCAGACGACAGGTTCCATTTTTGGGCGCCGAGCACAGAGTGGAGC
GGAAAAAAAATGTTGAACTCAGAGATCCAAGATTTGACGAAAAATCCGGA
ACATATAGTGCAGAAACCTTCAAGAAGAACTACCAGTTTGTCTCCCAGAT
TCGAGCAAAGGAAGTTGGTCAGCTGAAGAAAAAACTGGACGAAGTGGAGG
ATGAGGCGGAGAAGCACCATATAAAGGACACCATGCAGCGACTTATCAAT
AAAAATGTGGAGGACAAGAAGTGGCACACCAAACAGAAGCAACTGAAAAA
GGAGCGCTCCGCCATTCAGAAGAAACACGATTTGGGACAACAACCTCATT
ATCTGACAAAGAAGGAGCGTCGAGCTAAGGAACTAGTTGCCCAATTCGAG
AAGCTGAAAAACACTGGAAAACTCAACAAGCACATGGAAAAGCGACGCAA
GAAGAACGCCGCCAAGGACCGCAAACGCATTGGTATAGAAGCAAGCTTTC
TAGACCAT
FMO01872.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8461-RA | 883 | CG8461-RA | 91..822 | 9..740 | 3660 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14512883..14513422 | 612..73 | 2700 | 100 | Minus |
| 3R | 32079331 | 3R | 14512700..14512827 | 740..613 | 640 | 100 | Minus |
| 3R | 32079331 | 3R | 14513482..14513547 | 74..9 | 330 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:21:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 3194..3247 | 106..159 | 108 | 66.7 | Plus |
FMO01872.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:58:18 Download gff for
FMO01872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8461-RA | 60..799 | 9..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:25 Download gff for
FMO01872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8461-RA | 91..830 | 9..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:18 Download gff for
FMO01872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8461-RA | 91..830 | 9..748 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:18 Download gff for
FMO01872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14512692..14512827 | 613..748 | 97 | <- | Minus |
| 3R | 14512883..14513420 | 75..612 | 100 | <- | Minus |
| 3R | 14513482..14513547 | 9..74 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:25 Download gff for
FMO01872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10338414..10338549 | 613..748 | 97 | <- | Minus |
| arm_3R | 10338605..10339142 | 75..612 | 100 | <- | Minus |
| arm_3R | 10339204..10339269 | 9..74 | 100 | | Minus |
