FMO01874.5prime Sequence
942 bp (269 high quality bases) assembled on 2008-04-28
> FMO01874.5prime
CAGTCGACATGAACAGCCTAAGGACAGCAACCATGCGATTTGCCGCTCTG
GCCAGCTCCAGTGCCGGATCTCTCGGCAAGCGCGATTTCACCCGCAGCCT
GTGGCACATGACCAAAAAGCCGGTGACAGCCGGAGGATCCGATCATGTAA
CCGTGTTGAATCTCCACAAGCCCAGCATTAATTGCACGTGCGGCTGCAAC
GTGCACACCAAATGTGAGCGGGAACTGGTGGAGTTCCTCACCGAGGAGAT
AGTGGCCGAGCGCAAGGTTCAAAAGGGCAAGACGGTGCCAAGCACCTGAA
TGGATCGCCGTAAACTGCCGGCCCCATGTGACCCACCAGCAACCGAATAA
GGAAAAGGGGGGGGGGCCACCTTCAATGGGAAACCTTCCGGGGGAAAAGG
GAAGGAAGAAACCCCAAAACCCACCCCCCAATGGTGAAAAACCCGGAATT
CCGGGGAAAATGGAAAAACCAAGCCCCCCTTTTCAGGGGGGAACTCCAAA
AAGGGGAAACTTCCCCCGTTTCCTTTTACCTGGGATTTTTCTTTTAGGGG
AAAACCCCAGGGGGGGGAAAAACAAAAGTTCTTCTCCTCTTGTGTAAAAA
GGGCGCCTTCTTCCGGGGGGGGGGGGAAAAAATAGTTCCCCCCCCCCCCC
CGGGGCGGGGGGGGGGGGATTTTTTTTAAAAAGTGTTTAAAAAAACTTTG
GGAAGAGAAGAAGGAGCGCCCCCGTGGTGTGTTATTGAAAAAAGAGGGAG
CACAACACCCCCCCCTCGATGCACCTCTCTCCTTTTGTGTTGTGTGGTGG
AAGATACTGACTGTACTGGTGGGGTGGAGGGGTGTGTTTTTTTATTTCTT
GTGCGCGGGTGCGGTGTGTGTGAGGGTGCGGTGTTGATTTTATGATATAT
ATATATTACTGCCACCCCCGCGTGAGCGGTGTGGTGTGTGTG
FMO01874.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| P32-RA | 1154 | CG6459-RA | 107..486 | 9..382 | 1505 | 94.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17672328..17672534 | 215..9 | 1035 | 100 | Minus |
| 2R | 25286936 | 2R | 17672127..17672209 | 296..214 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:08:55 has no hits.
FMO01874.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:58:21 Download gff for
FMO01874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6459-RA | 102..465 | 9..364 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:57 Download gff for
FMO01874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| P32-RA | 107..470 | 9..364 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:41 Download gff for
FMO01874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| P32-RA | 107..470 | 9..364 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:41 Download gff for
FMO01874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17672127..17672209 | 214..296 | 100 | <- | Minus |
| 2R | 17672330..17672534 | 9..213 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:57 Download gff for
FMO01874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13559632..13559714 | 214..296 | 100 | <- | Minus |
| arm_2R | 13559835..13560039 | 9..213 | 100 | | Minus |
