FMO01876.5prime Sequence
551 bp (551 high quality bases) assembled on 2008-04-28
> FMO01876.5prime
CAGTCGACATGACCACGTTGCGACCCTTCACCTGCGACGACCTCTTTAAG
TTCAACAATGTAAACTTTGACCCACTTACGGAGACCTACGGGCTGTCCTT
CTACACCCAGTACCTGGCCAAGTGGCCGGAGTACTTTCAGCTTGCGGAGT
CGCCCAGCGGACAAATAATGGGCTACATCATGGGCAAGGTGGAGGGACAC
CTGGACAACTGGCACGGACACGTGACTGCGCTGACCGTCTCGCCCGACTA
CCGGCGCCTTGGTCTGGCTGCGCTGCTCATGAGTTTCCTGGAGGACATTT
CGGAGAAAAAGCGAGCATACTTTGTGGATCTTTTTGTGAGGAAGAGCAAC
CAGGTGGCAATAAACATGTACACGAACCTTGGCTACATCATATACCGCAC
CATACTTGAGTACTACTCCGGCGACCAGGACGAGGATGCGTACGACATGA
GAAAGGCCTTATCCAGGGACGTCAACAAAAAGTCGGTCATACCGTACACG
CAGCCTGTACGACTGGAACATATAGATATGAATGCAAGCTTTCTAGACCA
T
FMO01876.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NAA20-RD | 1247 | CG14222-RD | 110..634 | 9..533 | 2625 | 100 | Plus |
| NAA20-RC | 1242 | CG14222-RC | 110..634 | 9..533 | 2625 | 100 | Plus |
| NAA20-RA | 1233 | CG14222-RA | 110..634 | 9..533 | 2625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19622335..19622471 | 444..308 | 685 | 100 | Minus |
| X | 23542271 | X | 19622537..19622666 | 307..178 | 650 | 100 | Minus |
| X | 23542271 | X | 19622729..19622844 | 177..62 | 580 | 100 | Minus |
| X | 23542271 | X | 19622176..19622265 | 533..444 | 450 | 100 | Minus |
| X | 23542271 | X | 19622913..19622965 | 61..9 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:23:59 has no hits.
FMO01876.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:58:24 Download gff for
FMO01876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14222-RA | 108..632 | 9..533 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:47 Download gff for
FMO01876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NAA20-RA | 110..634 | 9..533 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:59 Download gff for
FMO01876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NAA20-RA | 110..634 | 9..533 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:59 Download gff for
FMO01876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19622176..19622264 | 445..533 | 100 | <- | Minus |
| X | 19622335..19622471 | 308..444 | 100 | <- | Minus |
| X | 19622537..19622666 | 178..307 | 100 | <- | Minus |
| X | 19622729..19622844 | 62..177 | 100 | <- | Minus |
| X | 19622913..19622965 | 9..61 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:47 Download gff for
FMO01876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19516368..19516504 | 308..444 | 100 | <- | Minus |
| arm_X | 19516570..19516699 | 178..307 | 100 | <- | Minus |
| arm_X | 19516762..19516877 | 62..177 | 100 | <- | Minus |
| arm_X | 19516946..19516998 | 9..61 | 100 | | Minus |
| arm_X | 19516209..19516297 | 445..533 | 100 | <- | Minus |
