FMO01881.5prime Sequence
689 bp (689 high quality bases) assembled on 2008-04-28
> FMO01881.5prime
CAGTCGACATGCTGCGTTCGGCGATGATGTCATCGACCCTGTCCCGGGCT
CTCCAAAAGGCGACTCAGACACCGAATGCGTCGATTTCGGCGCTGCCCGC
TCTGAATTTGGCCCTGGTGCGCCAACAACAAACGCTTCCAGTTGCCGAAG
TGGCCCAAAATCTGCCCAAGAAGGGCTACTCTCCGTTCGGCACCAAACAG
TCCTCCGTTGCGGAGTGGTCACTGGCCAGACTGGACGATCTGCTCAACTG
GGGTCGCAAGGGCTCGATCTGGCCACTGACTTTCGGTTTGGCCTGCTGTG
CCGTCGAAATGATGCACATCGCTGCTCCGCGTTACGACATGGATCGATAT
GGTGTTGTGTTCCGTGCATCTCCACGTCAGGCCGATGTCATCATCGTCGC
TGGCACGCTGACCAACAAAATGGCACCGGCCCTGCGAAAGGTCTACGACC
AAATGCCCGAGCCACGTTGGGTCATCTCCATGGGCAGCTGTGCCAACGGC
GGCGGCTACTACCATTACTCGTACTCCGTCGTCCGTGGCTGCGATAGGAT
AATCCCCGTCGACATATACGTACCCGGTTGTCCGCCAACCGCCGAGGCGC
TCATGTACGGCGTTTTGCAGCTGCAGAAGAAGGTTAAGCGGATGAAGACG
CTCCAGATGTGGTATAGGAAGGCAAGCTTTCTAGACCAT
FMO01881.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9172-RC | 1282 | CG9172-RC | 77..741 | 7..671 | 3325 | 100 | Plus |
| CG9172-RA | 909 | CG9172-RA | 80..744 | 7..671 | 3325 | 100 | Plus |
| CG9172-RB | 897 | CG9172-RB | 68..732 | 7..671 | 3325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15986014..15986678 | 671..7 | 3325 | 100 | Minus |
| 3R | 32079331 | 3R | 29516034..29516480 | 225..671 | 1080 | 82.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:14:37 has no hits.
FMO01881.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:58:28 Download gff for
FMO01881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9172-RA | 22..698 | 1..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:26 Download gff for
FMO01881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9172-RB | 60..736 | 1..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:04 Download gff for
FMO01881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9172-RB | 60..736 | 1..676 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:04 Download gff for
FMO01881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15986010..15986682 | 1..676 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:26 Download gff for
FMO01881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15880043..15880715 | 1..676 | 99 | | Minus |
