FMO01884.5prime Sequence
1120 bp (1026 high quality bases) assembled on 2008-04-28
> FMO01884.5prime
CAGTCGACATGGAAGATATACAAAGATTTCAAAGGTCTCTAAAAGACTTT
GATTATTTCAAAGACTTTCAATGTTTTCTGAATATCAAACACAATTCTCG
AGCGCGGGCAACGCATATAAAGAAAAGGAACCCAAGATTTAATCCATTGA
CCGATCTAAATGAGCATAAATTTCGACTAAAGTACCGATACACTAAGGAA
AACCTTCGCAGAATTATTGAAATTGTACGGGATGACTTGGAAATTGAATA
TTTTGAGCCGTTAAAGAGGGAGCAAGTTCCAATAGATTTGCAGATTCTAT
CCGCTATTCGCTTGTGGGGCGGCACAGAGCACCCCAAATTAACTGCAATG
GCCCATGGCGTTAGTTTACGCACTTTGGCAAAAATAACTAGGCGCGTGGC
ATCTGTCCTATCATCGAAAGCTTCCAGGTATATCCGAATGCCGGCTACTC
TATCGGAAAAGGAGCGATCTGGTTCGGCGTTTCAAGCAATTGCCAATATG
CCGCAAGTCATTGGTGCTTTACTACAGACAACTGTGAGGTTTCAACCGGA
AAACTGTGCCCCTGATCTGGATGGAGAGGAGCTTTTGCCCGCCCTTACCA
GCCGGGAGGAGGAACTTCACATTCAGATTGTTTGCGATGCGGCTCATAAG
ATAAGGGACCTTGATATCCGACTGATCGATGAGCAGTCCATGCTCACCGA
CACCGAGATGTTCGGTCTGTCCAAAATAAAGGATCGATTCGAACAGAACG
AGTTCCGGGGTCGTATTTTGCTGGGCAACGAAATGGTGCGCTGCTCCTCC
TCCCTGTTCACACCGGTTCGATTCCCGAGGAACCAATCCGAGGAGCTGTA
TAACCACGCCCACGCGGTCACCTACGCATCGGCTAGAAAGTGTCTCAATC
TGCTGATGAGTCGCTTCGTATCCTTGCCACCGAAATCCAGGGTTCCCATG
GATCTGCAAAGCAAACGATTACGGCGTTGGCCATACTCCACAACATGGCC
ATGGAGTGGGTCGATTCAAGCATGAATACGGAACAGAAACATTTCACCCT
TTATTCCACTTTCTTTCATTCCTAAGGAAAGTACGAATCCGGAAATAGAC
AACAATCGAGAAACATCCTT
FMO01884.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12253-RA | 1240 | CG12253-RA | 30..1133 | 9..1109 | 5215 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10988284..10988980 | 328..1023 | 3420 | 99.7 | Plus |
| 2L | 23513712 | 2L | 10987835..10988155 | 9..329 | 1605 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:21:29 has no hits.
FMO01884.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:58:32 Download gff for
FMO01884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12253-RA | 10..1130 | 1..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:28 Download gff for
FMO01884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12253-RA | 21..1141 | 1..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:19 Download gff for
FMO01884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12253-RA | 21..1141 | 1..1120 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:19 Download gff for
FMO01884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10987826..10988155 | 1..329 | 98 | -> | Plus |
| 2L | 10988286..10988982 | 330..1025 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:28 Download gff for
FMO01884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10987826..10988155 | 1..329 | 98 | -> | Plus |
| arm_2L | 10988286..10988982 | 330..1025 | 99 | -> | Plus |
