FMO01886.5prime Sequence
1137 bp (878 high quality bases) assembled on 2008-04-28
> FMO01886.5prime
CAGTCGACATGGTCGTGGATATGGACACCAGCGAGACAGCCGTGGAGCTC
ACTGAGGCGGAGAACGAGCTGTACGACAGACAAATCCGACTCTGGGGTCT
GGAATCTCAGAAACGCCTTCGCACGGCCAAGATTCTCATCGCTGGACTGT
GCGGCCTGGGCGCCGAGATAACCAAGAACATCATCCTGTCCGGAGTGAAC
TCCGTGAAGCTGCTGGATGACAAGGACGTAACCGAGGAGGACTTTTGTTC
ACAATTCCTTGTCCCCCGTGAATCGCTGAACACCAACCGGGCCGAAGCAT
CATTGACACGGGCACGTGCTCTCAATCCCATGGTGGACATCTCCGCCGAC
CGCGAGCCCTTGAAGGAGAAGACCTCTGAGTTCTTCGGTCAGTTCGACGT
TGTGGTGGTCAATGGCGCGACCAACGAGGAACTGTTGCGCATTGACACCA
TTTGCCGGGACCTGGGCGTCAAGTTCATAGCCACCGATGTGTGGGGCACC
TTCGGGTTCTATTTTGCCAGTCTGCAGAAGCACAGCTACGTCGAGGATGT
TATTAAGCACAAGGTCGTAGCCAATTCGGAGAAGAAAAAGAAGTATGAAA
CCGTGTCCATTCCAACGCAGCGTGATGTGGATTATCCCGGCTACTCTGCC
TGGCTTGATTTCGATGTTACCGAGCCTAGTTATTTGCGAAAATTGAAGCG
CAATGGCCCGGGTGTTTTGCTATTTAAGTGTCCTGCAAAAGTTCCGCACT
GCCCACAAGCGGGATCCCAGCTACAAGACCCGAGAAGCTGACCTGGAATT
GCTTCGCGGAATTCGCTACGAACTGCTGCCCACCTCTATACTGGGCGACG
AAGCTCTAGTTCTGATTTTTGCACAGATCTCGCCAGCGGTCGCTGTTGTC
GTCGGCGTTGTGCACAAGAGGTCATCAAGGTGGTTTACTATATTGAAGGC
GCCACTCCGGTATCTGTTCGTTTTTGACCCTATAGACTTGTGCCCGATTA
CGTTGAGGCCATCGGAGCGAAGGCAAGCTTTTCTAAACCATTCGTTTGGC
CGCGCGGGCCAGTAATGGTCATAATCCCAATTCTAATCCAAATCCATATC
CTACACTAAGCCTAGAGAAATTCTGGGTCAGGACAAT
FMO01886.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:55:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aos1-RA | 1167 | CG12276-RA | 92..1102 | 9..1022 | 4740 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:55:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12433128..12433558 | 545..115 | 2140 | 99.8 | Minus |
| 3R | 32079331 | 3R | 12432598..12433072 | 1022..545 | 1950 | 96.2 | Minus |
| 3R | 32079331 | 3R | 12433625..12433731 | 115..9 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:55:56 has no hits.
FMO01886.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:58:34 Download gff for
FMO01886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12276-RA | 174..1191 | 9..1031 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:10 Download gff for
FMO01886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aos1-RA | 92..1109 | 9..1031 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:27 Download gff for
FMO01886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aos1-RA | 92..1109 | 9..1031 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:27 Download gff for
FMO01886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12432591..12433072 | 545..1031 | 95 | <- | Minus |
| 3R | 12433129..12433557 | 116..544 | 99 | <- | Minus |
| 3R | 12433625..12433731 | 9..115 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:10 Download gff for
FMO01886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8258313..8258794 | 545..1031 | 95 | <- | Minus |
| arm_3R | 8258851..8259279 | 116..544 | 99 | <- | Minus |
| arm_3R | 8259347..8259453 | 9..115 | 100 | | Minus |
