FMO01888.5prime Sequence
982 bp (910 high quality bases) assembled on 2008-04-28
> FMO01888.5prime
CAGTCGACATGGAGGAGGTCGAAATCATCACAGAAAAGAAATCCAATCCC
GTAAAGTCATTTATTGCGGGCGGCGTGGGAGGCATGTGCAATGTGCTCGT
TGGCCATCCATTGGACACAATAAAGGTCCGTCTCCAAACCATGCCCACAC
CTCCACCTGGACAGCCGCCGAGATACAAGGGAGTCATAGATTGTGCCGCC
AGGACATTTCGTTATGAGGGTTTTCGCGGATTCTACAGAGGAATATCCGC
TCCACTTGTGGGAGTAACACCCATCTATGCCGTGGACTTTGCCGTCTATG
CGGCGGGTAAACGATTGTTCCAAACGGATGACCACATTAGGCTCACCTAC
CCACAAATCTTCGCCGCGGGAGCCTTGGCCGGAGTTTGTTCTGCCCTCGT
CACAGTGCCCACCGATCGTATAAAAGTCCTTCTGCAGACGCAAACCGTGT
CCAACGGACCTCTGCTCTACAATGGAACCATTGACACGGCCGCCAAGCTA
TATAGGCAGGGTGGCATTCGGAGCCTCTTCAAGGGAACATGCGCGTGCAT
TCTGAGAGACTCGCCCACCGGTTTTTACTTTGTGACCTACGAATTCCTAC
AGGAATTGGCTAGAAAGAAGTCCGCCAATGGAAAGATTAGCACCACATCA
ACTATTCTGTCCGGCGGAACGGCGGGCATTGTGTTTTGGACTTTGGCCGT
GCCGTTCGATGTACTTAAAAGCCGTCTCCAGTCGGCACCTGAGGGAACAT
ACAAGCACGGCATTCGCAGCGTTTTTAGAAACCTCATGGCCACAGAAGGC
CCAAAAGCTCTATTTCGCGGTATCCTGCCAATTCTACTTCGTGCCTTTCC
CTCCACCGCAGCAGTTTTCTTCGGCGTGGAGCTAACCAATGATTTGCTGA
GGCTGCAAGCTATTTAGACCATTCGTATGCGCGCGGACCATGTAAGTGTT
CATAATCATAATCATATCATAAATCATATCAC
FMO01888.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3476-RA | 1245 | CG3476-RA | 286..1177 | 9..900 | 4445 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7027986..7028420 | 124..558 | 2175 | 100 | Plus |
| 2L | 23513712 | 2L | 7028488..7028666 | 557..735 | 895 | 100 | Plus |
| 2L | 23513712 | 2L | 7028726..7028891 | 735..900 | 830 | 100 | Plus |
| 2L | 23513712 | 2L | 7027811..7027929 | 9..127 | 580 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:08:06 has no hits.
FMO01888.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:58:38 Download gff for
FMO01888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3476-RA | 213..1122 | 1..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:59 Download gff for
FMO01888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3476-RA | 281..1190 | 1..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:36 Download gff for
FMO01888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3476-RA | 281..1190 | 1..912 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:36 Download gff for
FMO01888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7027806..7027927 | 1..125 | 96 | -> | Plus |
| 2L | 7027988..7028420 | 126..558 | 100 | -> | Plus |
| 2L | 7028490..7028666 | 559..735 | 100 | -> | Plus |
| 2L | 7028727..7028891 | 736..900 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:59 Download gff for
FMO01888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7027806..7027927 | 1..125 | 96 | -> | Plus |
| arm_2L | 7027988..7028420 | 126..558 | 100 | -> | Plus |
| arm_2L | 7028490..7028666 | 559..735 | 100 | -> | Plus |
| arm_2L | 7028727..7028891 | 736..900 | 100 | == | Plus |
