FMO01889.5prime Sequence
1181 bp (532 high quality bases) assembled on 2008-04-28
> FMO01889.5prime
CAATCGACATGATGAGCTTTCCACGCATGTTATCACTGTGCCTTAGCGTG
CTTGTAATACTGCCGCTTCCCCTCCAGTCGGTGGATCCCCTGACCATTGG
TGCCGTTGGCGCCGTGGCCCTTGGGGCGTACTTCAAAGAACATACATATT
GCCGGTTTGCCGAATGCTGCGATGACCGAAACATTCCGGCGAGAATAGAT
GAATTACAAAGATCCCTGGAACGCACCCTCATTGGCCAGCACATCGTGAG
GCAGCATATCGTCCCCGCACTGAAGGCGCACATCGCTTCGGGCAATAAGT
CACGGAAACCGCTGGTCATCAGCTTTCACGGCCAGCCCGGTACGGGCAAG
AATTTTGTGGCTGAGCAAATTGCAGATGCTATGTATTTGAAGGGCTCCAG
GTCAAACTATGTAACCAAGTATCTCGGACAAGCTGACTTTCCCAAGGAAA
GTGAGGTGTCTAACTATAAGGTGAAAATCAATAATGCGGTGCGCGATACC
TTGCGTAGCTGCCCGAGATCTTTGTTCATCTTCGACGAGGTGGATAAAAT
GCCCAGCGGAGTATTCCACCAGCTCACCTCGCTGGTGGACTACAACGCCT
TTGTCGATGGCACGGATAACACAAAGGCAATCTTCATCTTTCTCTCGAAC
ACGGCGGGCAGTCATATAGCCAGTCATCTGGGTAGTGTGATGAACAATGG
TATGCTGCGCGAGGACACACGACTGAGTGACTTTGAGCCCCTTTTGCGGA
AGGCCGCCTATAACATGGATGGCGGTATGAAAAAGACCACCATGATTGAG
TCTCATGTTATCGATCATTTCATTCCGTTCCTGCCGATGGAGAAGCGCAT
GTGATCCAGTGCCTGCAGGCGGAGCTTTTAAGTGGCGGCGCGATCGTAAG
CAAGCGAACAACCAAAAAATCATTGAAGGACATATAAACTTCTCCATTAG
TTACGATCGCACGCAACAGCTTGTTCGCAATTTCGGGCCTGCAGACGCTT
GGAAAAGAACGTGGTCATGTCATTTACGCTAGCTTTTCTTAGACGATTCG
TTGGCGCGCGGGACCAGGTAATGAACATAATCGTAAACTAATCTGATCTA
TTCAACTAGCCTCAGGGAATCTGGCCTGACTGCCTGATCTCACAATTAAA
GCGCCGCGCGCCAACGTAGTGTTCCTGGAGC
FMO01889.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:56:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Torsin-RB | 1383 | CG3024-RB | 268..1287 | 9..1027 | 4670 | 97.7 | Plus |
| Torsin-RA | 1184 | CG3024-RA | 69..1088 | 9..1027 | 4670 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:56:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4648727..4649515 | 988..201 | 3545 | 97.5 | Minus |
| X | 23542271 | X | 4649573..4649765 | 201..9 | 965 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:56:04 has no hits.
FMO01889.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:58:39 Download gff for
FMO01889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3024-RA | 63..1073 | 3..1014 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:15 Download gff for
FMO01889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Torsin-RA | 64..1074 | 3..1014 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:31 Download gff for
FMO01889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Torsin-RA | 64..1074 | 3..1014 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:31 Download gff for
FMO01889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4648727..4649514 | 202..988 | 97 | <- | Minus |
| X | 4649573..4649770 | 3..201 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:15 Download gff for
FMO01889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4542760..4543547 | 202..988 | 97 | <- | Minus |
| arm_X | 4543606..4543803 | 3..201 | 97 | | Minus |
