FMO01892.5prime Sequence
638 bp (638 high quality bases) assembled on 2008-04-28
> FMO01892.5prime
CAGTCGACATGGCCAAAATGTACGGAAAGGGTAAGACTGCTATCGAGTCG
GAGGAGCTGCAGAAGCGACGCTGGCAGATCGAGCTGGAGTTCGTGCAGTG
CCTGTCGAACCCCAACTATCTAAACTTCCTTGCACAGCGTGGATTTTTCA
AGGACCAGTCGTTCATCAACTACCTGAAGTATCTGCAGTACTGGAAGGAG
CCGGACTATGCGAAATACCTCATGTACCCAATGTGCCTCTACTTCCTCGA
TCTGCTGCAGTACGAACACTTCCGCCGGGAGATCGTCAACTCGCAGTGCT
GCAAGTTCATAGACGACCAGGCCATTCTGCAGTGGCAGCACTACACTCGC
AAGCGCATCAAACTGATCGAAAACGTTACGGCCGCCCAGCAGCAACAACA
GCAGCTTCAGCAGCAACAACAGCAGGCGAACGGCATGGAGGCAGCAACGG
GAGGCGAATCAGCAGCACCTACCCCCAACGTGAACGGGTCAGCTTCCACG
GCGGATAGTCAACAGACGTCTTCTGCCCTACAGCCTGTCCAAGCACAGCC
TGGAAATCCCCAGCAGCAGCAGCAAATCAATGGCGTGGCATCGGGGGCCA
ACATAAAACTAGAGTTAAACGCAAGCTTTCTAGACCAT
FMO01892.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED31-RC | 818 | CG1057-RC | 159..770 | 9..620 | 3060 | 100 | Plus |
| MED31-RB | 823 | CG1057-RB | 164..775 | 9..620 | 3060 | 100 | Plus |
| MED31-RA | 1098 | CG1057-RA | 439..1050 | 9..620 | 3060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4642751..4643244 | 127..620 | 2470 | 100 | Plus |
| 3R | 32079331 | 3R | 4642569..4642658 | 37..126 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:06:30 has no hits.
FMO01892.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:58:46 Download gff for
FMO01892.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1057-RB | 144..768 | 1..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:23 Download gff for
FMO01892.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED31-RA | 430..1054 | 1..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:54 Download gff for
FMO01892.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED31-RA | 430..1054 | 1..626 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:54 Download gff for
FMO01892.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4642392..4642428 | 1..36 | 91 | -> | Plus |
| 3R | 4642569..4642658 | 37..126 | 100 | -> | Plus |
| 3R | 4642751..4643248 | 127..626 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:23 Download gff for
FMO01892.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 468114..468150 | 1..36 | 91 | -> | Plus |
| arm_3R | 468291..468380 | 37..126 | 100 | -> | Plus |
| arm_3R | 468473..468970 | 127..626 | 99 | | Plus |
