Clone FMO01894 Report

Search the DGRC for FMO01894

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:18
Well:94
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG11837-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01894.5prime Sequence

940 bp (940 high quality bases) assembled on 2008-04-28

> FMO01894.5prime
CAGTCGACATGCCCAAGGTTACGAAGGAAAAGAAGAGCCGGATTCATAAT
GATGTGCAAAAACAGGGGATCGTTTTCAACAAGGACTTTGGTCAGCACAT
CCTGAAGAATCCTCTGGTGATAACCACCATGCTGGAGAAAGCCGCTTTGA
GAGCTACCGATGTGGTGCTGGAAATCGGTCCTGGAACCGGAAACATGACC
GTTCGGATGCTGGAGCGCGCCAAGAAAGTGATCGCCTGTGAGATTGACAC
ACGATTGGCCGCCGAGTTGCAGAAGCGTGTGCAGGCAACTCCGCTGCAGC
CGAAGCTCCAGGTGCTGATTGGAGACTTCCTAAAGGCGGAGCTGCCCTTC
TTCGATCTGTGCATCGCCAACGTTCCGTATCAGATCAGTTCGCCACTGAT
CTTCAAGTTGCTCCTCCACCGACCACTCTTCCGTTGCGCCGTACTTATGT
TCCAACGCGAGTTCGCAGAACGATTGGTGGCCAAACCGGGTGATAAGCTC
TACTGTCGTCTGAGTATCAACACCCAACTGCTGGCCCGGGTGGACATGCT
CATGAAGGTGGGCAAGAACAACTTTAGGCCGCCACCAAAGGTAGAAAGCA
GTGTGGTCCGGCTGGAGCCAAAAAACCCACCGCCACCGGTCAACTTCACC
GAATGGGACGGACTCACCCGTATTGCCTTCCTGCGCAAGAACAAAACGCT
GGCGGCTACCTTTAAAGTGACGTCCGTTTTGGAGATGTTGGAGAAAAACT
ACAAGCTATACCGCTCACTCATGAATGAGCCGATTGAAGACGACTTCAAA
ATGCATGATATGTCATAAGTATCTTGGAGGACAGGACATGCCGCAAAACG
TGCGAGAGCATGGACATCGACGACTTTATGCGGCTCCTGCTGGCTTTCAA
GTCAGCGGGCATTCACTTCAATGCAAGCTTTCTAGACCAT

FMO01894.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG11837-RA 1103 CG11837-RA 108..1025 9..922 4415 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29049719..29050432 66..779 3540 99.7 Plus
3R 32079331 3R 29050495..29050643 778..922 500 95.3 Plus
3R 32079331 3R 29049600..29049658 9..67 295 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:21:36 has no hits.

FMO01894.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:58:49 Download gff for FMO01894.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11837-RA 81..1012 1..930 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:33 Download gff for FMO01894.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11837-RA 99..1030 1..930 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:23 Download gff for FMO01894.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11837-RA 99..1030 1..930 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:23 Download gff for FMO01894.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29049591..29049657 1..66 94 -> Plus
3R 29049720..29050432 67..779 99 -> Plus
3R 29050497..29050648 780..930 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:33 Download gff for FMO01894.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24875313..24875379 1..66 94 -> Plus
arm_3R 24875442..24876154 67..779 99 -> Plus
arm_3R 24876219..24876370 780..930 92   Plus