Clone FMO01895 Report

Search the DGRC for FMO01895

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:18
Well:95
Vector:pMK33-CFH-BD
Associated Gene/Transcriptborr-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01895.5prime Sequence

423 bp (257 high quality bases) assembled on 2008-04-28

> FMO01895.5prime
GCATTTAAAAAAGGGAAGTTATCAGTCGACATGCCGCGCACCAATATACC
ATTAAAACTCCAAACGCAACCGCGAGGTGGCTAATCGCGAAAACAAGGTG
CGCCTGTACGAGCTGAAAATGGATTCCCGCCTTATCAGCATCGATTCTCT
GGACACCAAGTTCCTCTTCGCCGTGGACCACCAGGTGAAGACACTGCTCG
GCCAGGTGCAGAAGGAGCTGGCCAATCTGAAGATGCCCGAAGTGCTGCGC
CTCTTCTAGGAACTGGACCGCTTCAGCGACTTCAAGGCCTGCGATCAAAC
GCAGCTGCTCGCCTCGATGTCCATGAGTGGCAGCGCCATCGAGGGCCACC
CCCCCTCCGCCACTGTAATTTCAATGACGAATAGGATATCACTTTCCTTG
CCAGCGGTGGGAGTATCCTTTGT

FMO01895.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:39
Subject Length Description Subject Range Query Range Score Percent Strand
borr-RA 1286 CG4454-RA 133..521 31..419 1525 93.1 Plus
borr-RB 1298 CG4454-RB 133..483 31..381 1470 94.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9252653..9252986 365..31 1430 95.8 Minus
Blast to na_te.dros performed on 2014-11-28 20:21:38 has no hits.

FMO01895.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:58:51 Download gff for FMO01895.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4454-RB 131..493 31..396 93 -> Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:36 Download gff for FMO01895.5prime
Subject Subject Range Query Range Percent Splice Strand
borr-RA 133..522 31..423 92   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:25 Download gff for FMO01895.5prime
Subject Subject Range Query Range Percent Splice Strand
borr-RA 133..522 31..423 92   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:25 Download gff for FMO01895.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9252635..9252986 31..382 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:36 Download gff for FMO01895.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9252635..9252986 31..382 94   Minus