FMO01896.5prime Sequence
890 bp (890 high quality bases) assembled on 2008-04-28
> FMO01896.5prime
CAGTCGACATGTCGGCCATATCGGGACGCGCCCTGCACTATGTGTTCAAA
ATCGGAGATCGGGCGAAAAACGCCTTCTTCTTTCGGCAAATCTTGGGAAT
GACGGTGCTGCGGCATGAGGAGTTCAAGGAGGGATGCGACGCAGCTTGCA
ACGGGCCCTATGACAATCGGTGGAGCAAAACAATGGTGGGTTATGGACCC
GAAAGTTCGCATTTCGTCATCGAACTCACGTATAACTATGGAGTGAGCAG
CTACGAAATGGGCAATGATTTTGGGGGCGTGACCATACACTCCAAGGATA
TCCTTTCCCGCGCCGCCGAGCACTCGTATCCTGTGACACAGGTGTCTGGA
AAAGCCGGTAGTCTGCTGACCTCGCCCGATGGCTACAAGTTCTATGTGAT
CGATCAGGCCTCTGCCAGCTCTGATCCTGTCCAATCGGTGGAGCTTAATG
TGAGCAATCTTCAAAACTCGCGCAAATACTGGCACGATTTGCTGCAACTG
AAAGTTCTCGAGGAGAACGAAGCAAGCGTGCGTTTGAGTTACGGTGAACA
GCAGGCTTCACTGGAGATCACCCAGATCTCAGAGCCAATTAATAGAGCTA
AGGCCTATGGACGAATCGCCTTTGCCATTCCGGCGGCCCAGCAGCCACCT
CTCCAAGAAGCGGTTAAAGCAGCTGGCGGGGCCATTCTAACACCTCTGAT
TACCCTGGATACGCCAGGAAAGGCCACCGTTACGGTGGTAATTCTCGGTG
ACCCCGATGGTCATGAGATCTGCTTTGTCGACGAGGAGGGCTTCGGCCAG
CTATCTCAGGTGGAGTCCGATGGCGATAAGCGACTGGATCGAAACATCGA
AAAGGATCTCTTCCAACCGAAAGCAAGCTTTCTAGACCAT
FMO01896.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1532-RB | 1236 | CG1532-RB | 87..950 | 9..872 | 4305 | 99.9 | Plus |
| CG1532-RA | 1073 | CG1532-RA | 87..950 | 9..872 | 4305 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21026411..21027022 | 872..261 | 3045 | 99.8 | Minus |
| X | 23542271 | X | 21027737..21027845 | 262..154 | 545 | 100 | Minus |
| X | 23542271 | X | 21028178..21028275 | 106..9 | 490 | 100 | Minus |
| X | 23542271 | X | 21027902..21027953 | 155..104 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:50:18 has no hits.
FMO01896.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:58:53 Download gff for
FMO01896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1532-RA | 72..943 | 9..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:24 Download gff for
FMO01896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1532-RA | 87..958 | 9..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:35 Download gff for
FMO01896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1532-RA | 87..958 | 9..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:35 Download gff for
FMO01896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21026403..21027021 | 262..882 | 99 | <- | Minus |
| X | 21027738..21027844 | 155..261 | 100 | <- | Minus |
| X | 21027903..21027952 | 105..154 | 100 | <- | Minus |
| X | 21028180..21028275 | 9..104 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:24 Download gff for
FMO01896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20899207..20899302 | 9..104 | 100 | | Minus |
| arm_X | 20897430..20898048 | 262..882 | 99 | <- | Minus |
| arm_X | 20898765..20898871 | 155..261 | 100 | <- | Minus |
| arm_X | 20898930..20898979 | 105..154 | 100 | <- | Minus |
