FMO01903.5prime Sequence
988 bp (988 high quality bases) assembled on 2008-04-28
> FMO01903.5prime
CAGTCGACATGCCGAAAAAGAAGACTGGGCAGCGTAAGAAGGCCGAGAAG
CAGAAGCTTCGCCTCAAGGAGATCCGCAGCAGAGAGGTGCCTCTTGCGGA
TTTGCCCTGCAATGCACCAATGGAGTGCGACAAGTGCGAGAAGAAGCAGA
AGTCGAGAGCCTTCTGCTATTTCTGCCAGAGCATTCAGAGATTACCCATT
TGCGCCCAGTGCGGGAAAATCAAGTGCATGCTAAAGACCGGCGACTGCGT
GGTCAAACATCCGGGCGTCTACACCACGGGCCTCGGAATGGTGGGCGCCA
TCTGCGACTTCTGCGAGGCTTGGGTTTGCCACGGACGCAAGTGTCTCCAA
AACCACGCCTGCACGTGTCCGCTGCAGAATGCGACCTGCCTGGAGTGCGA
ACGCGGTGTCTGGGAGCACGGTGGGCGCATCTTCAAGTGCTCCTTCTGCA
ACGGATTCCTGTGCGAGGACGATCAGTTCGAGCACCAGGCCAGCTGTCAG
GTGCTGGAGTCGGAGAACTACAAGTGTCAATCGTGCAACAAGCTGGGTCA
ATACTCCTGCCTGCGCTGCAAGACCTGTTACTGCGAGGATCACGTGCGTC
GCAAGGGCTTCAAGTACGACAAGAACAAGCCAATTCCATGCCCCAAGTGC
AACTACGATACCTCGGTGACCAAGGACCTCAGCATGTCCACGCGGTCGCA
CAAATTCGGGCGACAGCAACAAGGAGGCAACAGCGACGACGAGGAGGGAT
ACGGTGGATACTATGGAGCCGGTGGCAGTGGCTATTATGGTGGCGCCGCC
AGTGGGGGCTACTCCTACGGGGGTGATGACGATGAAGATGAGTCCGATGG
AGACTACGATGATGAAAGCGATGACGACGATGATGATGATGAGGAAGAGG
ACGAGACACGAAAGTGAACCGGAGAGGAACCGACAAAAAGGCCCCAAAGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCAGGT
FMO01903.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Noa36-RA | 1138 | CG10009-RA | 68..1012 | 9..948 | 4585 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28598727..28599221 | 503..9 | 2475 | 100 | Minus |
| 3R | 32079331 | 3R | 28598191..28598640 | 943..498 | 2060 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:21:42 has no hits.
FMO01903.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:59:04 Download gff for
FMO01903.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10009-RA | 59..1007 | 9..953 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:39 Download gff for
FMO01903.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Noa36-RA | 68..1016 | 9..953 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:26 Download gff for
FMO01903.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Noa36-RA | 68..1016 | 9..953 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:26 Download gff for
FMO01903.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28598181..28598637 | 501..953 | 98 | <- | Minus |
| 3R | 28598730..28599221 | 9..500 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:39 Download gff for
FMO01903.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24423903..24424359 | 501..953 | 98 | <- | Minus |
| arm_3R | 24424452..24424943 | 9..500 | 100 | | Minus |
