FMO01908.5prime Sequence
785 bp (785 high quality bases) assembled on 2008-04-28
> FMO01908.5prime
CAGTCGACATGTCGCTTATAAAGAATTTGGTAAAAGAGCCCGAACAGAAG
GCAAAGAAAAAGAAAAAGAATGCGGGATCTGGAGAAAGCGATTCCGATGA
GAAGGACAAGCCTCTGCGGCCGTTCATCAAAACCGCGACAGATCTACAGA
GGCTGAAGCTGGAGAAGCTCATGAAGAATCCGGATAAGCCCGTGGTCATA
CCGGAGCAGCGTCGCGAACGGGACTTCATGTCCTCGGTGCCCACGTTCGT
GCGGAATGTGATGGGAAGCAGTGCTGGAGCGGGTTCCGGCGAGTTCCATG
TGTACCGCCACTTGCGACGCAAGGAGTACGCCCGCCAGAAGAACATCCAG
AACCAGAGTGCCCGCGAAGCAGCAGATGAAGCTTACCAGCAGAAGTTGGA
CGACAACAGACGCGCGGCCGAAGAAAAGACTGCTAAGAAACGAGCCAAAC
GGTTGAAGAGAAAACAGAGGGCGAAAAAGCCGAGAGAGGACAAGAAGCCA
CTGGCTAAGGAAGCCTCAGAGGATAGTAACACAGATTCCGAGGAAGAGCC
CACAGAAGAAAAGGCAGAAAGTAGCCCTGAGGAAGGACAACAGGTGGCAT
CCAAGGAATCCGACGACAATAACACCCAAGAAACTTCGAATGAAGAGGCA
GTGAATTCAAATACAGAAGCGAAAAGCGCAGAGGACACAAATGCAGTGGA
ATTAGATAGCACCGAAGCTACAAAGGAATCCCAAAATGTGGATCAAGAAC
AAGACAAGCCTGTGCCTGCAAGCTTTCTAGACCAT
FMO01908.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8441-RB | 938 | CG8441-RB | 133..893 | 7..767 | 3805 | 100 | Plus |
| CG8441-RA | 841 | CG8441-RA | 36..796 | 7..767 | 3805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16185167..16185752 | 767..182 | 2930 | 100 | Minus |
| 2R | 25286936 | 2R | 16185811..16185987 | 183..7 | 885 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:08:24 has no hits.
FMO01908.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:59:09 Download gff for
FMO01908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8441-RA | 8..775 | 1..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:04 Download gff for
FMO01908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8441-RA | 29..796 | 1..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:47 Download gff for
FMO01908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8441-RA | 29..796 | 1..767 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:47 Download gff for
FMO01908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16185167..16185751 | 183..767 | 100 | <- | Minus |
| 2R | 16185812..16185990 | 1..182 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:04 Download gff for
FMO01908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12072672..12073256 | 183..767 | 100 | <- | Minus |
| arm_2R | 12073317..12073495 | 1..182 | 97 | | Minus |
