FMO01917.5prime Sequence
1216 bp (994 high quality bases) assembled on 2008-04-28
> FMO01917.5prime
CAGTCGACATGTTTGGCGCCACACAATCGACGAACCGAATGAACGACTTC
GAGGTCGCCTCGCCGCCGGACGACTCCGTCTCGGCGCTGGAGTTCAGCCC
CAGCACGGTGCAAAAGAACTTCCTGGTGGCCGGAAGCTGGGACAGCACGG
TCCGCTGCTGGGAGGTGGAACAAAACGGGGCCACTGTGCCCAAGTCGATG
AAGACCATGGGCGGACCGGTGCTGGACGTTTGCTGGTCGGACGACGGCAG
CAAAGTGTTCGTCGCCTCCTGCGACAAGCAGGTGAAGCTCTGGGACCTCG
CCTCCGATCAAGTGATGCAAGTGGCGGCCCACGACGGTCCCGTTAAGACG
TGCCACATGGTCAAGGGACCCACGTACACCTGCCTCATGACCGGCTCCTG
GGACAAGACCCTAAAGTTCTGGGACACCCGTTCGCCCAATCCCATGATGA
CCATCAATCTACCCGAGCGGTGCTACTGCGCCGATGTGGAGTATCCGATG
GCCGTGGTGGGCACGGCCAACAGAGGACTCATCATATACTCGCTGCAGAA
TAGCCCAACCGAGTACAAGCGGCAGGAGAGTCCGCTGAAGTACCAGCACC
GTGCCATTTCCATTTTCCGGGACAAGAAAAAAGAGCCCACAGGCTGTGCG
CTGGGCAGCATTGAGGGCCGTGTGGCCATTCAGTATGTGAATCCGGGGAA
TCCAAAAGATAACTTCACCTTCAAGTGCCACCGTACTACGGGCACCTCAG
GCTACCATGATATTTATGCAGTAAATGACATCGCATTCCACCCTGTGCAC
GGCACCCTGGTGACCGTTGGCTCAGATGGCACCTTCAGTTTCTGGGACAA
GGATGCCCGGACCAAGCTCAAGTCCAGCGAGATCATGGATCAGTCCATTA
CCAAATGCGGATTTAACGCCAACGGAAGATATTTGCGTACGTCGTCGGCT
ACGACTGGTCGAAGGCCACGAGTACTTCAACCGGCCAAGAAGCCCAAATC
TTTCTGCGCTCGTGCTACGACGAGCTCAAGTCGCGCATTAACTGCAGCTT
TCTAGACCATCGTTGGCGCGCGGGACCAAGGTAATTGTCATATCTATCAT
AATCTAAATCATATCCAACTAGCTAGAGATCCTGTCTGACATAGCCTTGA
TCGACAATAAACGCCTGCCGACCGAGGATCTGACCAATCCAAATTGAAGA
TTTCGTGAGAGGCATA
FMO01917.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:56:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rae1-RA | 1189 | CG9862-RA | 76..1115 | 9..1044 | 5010 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:56:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21658844..21659477 | 1044..415 | 2895 | 98.6 | Minus |
| 2R | 25286936 | 2R | 21659525..21659932 | 416..9 | 2025 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:56:28 has no hits.
FMO01917.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:59:21 Download gff for
FMO01917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9862-RA | 65..1111 | 1..1044 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:26 Download gff for
FMO01917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rae1-RA | 69..1115 | 1..1044 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:41 Download gff for
FMO01917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rae1-RA | 69..1115 | 1..1044 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:41 Download gff for
FMO01917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21658847..21659475 | 417..1046 | 97 | <- | Minus |
| 2R | 21659525..21659939 | 1..416 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:26 Download gff for
FMO01917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17546352..17546980 | 417..1046 | 97 | <- | Minus |
| arm_2R | 17547030..17547444 | 1..416 | 99 | | Minus |
