FMO01918.5prime Sequence
881 bp (881 high quality bases) assembled on 2008-04-28
> FMO01918.5prime
CAGTCGACATGCGCGCCTTCATCGTAATGTGCCTGGTGGCAGTCGCCTGC
GCCGATAAGCTCGGCTACAACTACCAGCCCGTGGGACACTCCAGCTCCGG
ACTGTCCTTTGCTCCTGGAAGTGGCAGCATTGGAGGTGGATCCATTGGAG
GTGGTTCGATTGGAGGAGGCTCCATTGGAGGAGGATCCATTGGAGGAGGC
CTCATTGGTGGTGGCTCTATCGGAGGCGGTTCCATTGGAGGTGGTTCCCT
TGGTGGTTCCATCGGTGGTGGCTCTATTGATTCCGGTCTTGGCGGTCTTG
GTGGACTCGGTGGTCTAGGAGGTGGCGACGCTCTGGCCGCTCCAGTCTCC
TACAACGCCCCCGCTCCCGCTGCTGAGCTCCAGAAGGAGTTCTTCACCTA
CTCCGCCAACGAGCAGGACTTCGATGAGCCACAAGAACTGGAGCGTGTTG
CTGGATCCGTAAACAAGGGACTGCGCGTTGTCTTCATCAAGGGACCCGAG
AACCGTGGTCTGGAGAACGCTGCCCTAGCCCTCGCCAAGCAGGCTGCCCA
GCAGGAGACCGCCATCTATGTCCTGAACAAGCAGGCCGATATTGGAGATC
TTGCCCAGAAACTGAACGCCATCCGCAACAACAATAACAACAAGCCCGAG
GTGCACTTCGTCAAGTACCGCACTCCCGAGGATGCTGCCAACGCCCAGCG
CGCCATCCAGTCGCAGTACGACCAATTGGGAGGATCCTCTCAGGCCCACA
ACGGTGGTGTGGCACCCGCCCTGAACTTCGCCTCCGCTGGTCCCGTCCAG
AAGGCTAATGCTCAGATCCCTGAGAACGCTTACCTGCCCACTTCCATCTT
CCGTCGTCGTTTGGCAAGCTTTCTAGACCAT
FMO01918.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlL-RA | 1002 | CG6447-RA | 51..905 | 9..863 | 4275 | 100 | Plus |
| TwdlL-RB | 1066 | CG6447-RB | 130..969 | 24..863 | 4200 | 100 | Plus |
| TwdlB-RA | 1025 | CG6478-RA | 48..897 | 9..858 | 3380 | 93.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26624684..26625523 | 863..24 | 4200 | 100 | Minus |
| 3R | 32079331 | 3R | 26622579..26623403 | 858..34 | 3345 | 93.7 | Minus |
| 3R | 32079331 | 3R | 26632323..26632824 | 338..839 | 1775 | 90.2 | Plus |
| 3R | 32079331 | 3R | 26619592..26620103 | 345..856 | 1540 | 86.7 | Plus |
| 3R | 32079331 | 3R | 26630220..26630621 | 384..785 | 1080 | 84.6 | Plus |
| 3R | 32079331 | 3R | 26628051..26628458 | 785..378 | 1065 | 84.1 | Minus |
| 3R | 32079331 | 3R | 26626108..26626448 | 796..456 | 880 | 83.9 | Minus |
| 3R | 32079331 | 3R | 26634088..26634494 | 375..781 | 865 | 80.8 | Plus |
| 3R | 32079331 | 3R | 26619262..26619485 | 27..253 | 620 | 85.9 | Plus |
| 3R | 32079331 | 3R | 26620774..26621063 | 763..474 | 460 | 77.2 | Minus |
| 3R | 32079331 | 3R | 26631931..26632040 | 9..118 | 385 | 90 | Plus |
| 3R | 32079331 | 3R | 26640530..26640724 | 534..728 | 315 | 77.4 | Plus |
| 3R | 32079331 | 3R | 26656956..26657058 | 483..585 | 275 | 84.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:24:13 has no hits.
FMO01918.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:59:22 Download gff for
FMO01918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6447-RA | 51..914 | 9..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:54 Download gff for
FMO01918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlL-RA | 51..914 | 9..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:08 Download gff for
FMO01918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlL-RA | 51..914 | 9..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:08 Download gff for
FMO01918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26624675..26625523 | 24..872 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:54 Download gff for
FMO01918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22450397..22451245 | 24..872 | 99 | <- | Minus |
