FMO01920.5prime Sequence
935 bp (935 high quality bases) assembled on 2008-04-28
> FMO01920.5prime
CAGTCGACATGAATACAATTCGTCCTTGCGGTTGTAAGGGCGTTCGCACC
TGCTTGAGCTGCGAACAGGACTTTCATATAGCGAAGACCTCGCTACGGGA
ACAATTCCAGCAACTGGAAGCATGGTCCTACTGTATCCAGTGCGACCTTC
TGCAGCGCGGTTGGGATACCAATCATGTCCAAAAGGATCATGAAAATCAC
AAAAAAGATGAGGGCCTCCCACTGCCGGGCATCCTGGTGCAGGAGGAATT
CCTTAGCGTTGATGAGGGCGCCCAACTTATAGCCGACTTGGATGACCTGC
CATGGGACATCTCGCAGAGCGGCAGGCGAAAACAGAACTTCGGACCCAAG
ACCAACTTTAAAAAGCGCAAACTGCGGCTGGGATCCTTTGCCGGATTCCC
CAGGACAACGGAATATGTGCAACGGCGCTTCGAAGACGTTCCCCTGCTTC
GTGGCTTTCAGACCATCGAACAGTGCTCCCTGGAGTACGAGCCCAGCAAA
GGAGCCAGCATAGATCCGCACGTGGACGATTGCTGGATCTGGGGCGAGCG
TGTGGTCACTGTCAACTGCCTCGGCGACTCAGTGCTCACTTTGACGCCCT
ACGAAGTTCAACAATCGGGCAAGTACAACTTGGACTTGGTTGCCAGCTAC
GAAGATGAACTATTGGCGCCTCTACTGACAGATGACCAACTTGCAACTTT
TGAGGGAAAGGTGCTGCGCATACCTATGCCAAACCTCTCCTTGATAGTTT
TGTATGGGCCAGCGAGGTACCAGTTTGAGCATTCTGTACTACGCGAGGAT
GTCCAAGAGCGCCGCGTTTGTGTAGCCTACCGGGAGTTTACGCCCATGTA
CATCAATGGCGTAGACATCCAAAAGGAGATCCTGTCCGAGAAAGTCTCAG
ATATTCTGGCAATAAACGCAAGCTTTCTAGACCAT
FMO01920.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:56:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4036-RB | 950 | CG4036-RB | 22..933 | 9..917 | 4485 | 99.7 | Plus |
| CG4036-RA | 1002 | CG4036-RA | 74..985 | 9..917 | 4485 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:56:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9790970..9791694 | 9..733 | 3625 | 100 | Plus |
| 2L | 23513712 | 2L | 9791755..9791935 | 734..912 | 805 | 98.9 | Plus |
| 2L | 23513712 | 2L | 9789367..9789534 | 733..566 | 705 | 94.6 | Minus |
| 2L | 23513712 | 2L | 9789536..9789614 | 87..9 | 275 | 89.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:56:40 has no hits.
FMO01920.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:59:24 Download gff for
FMO01920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4036-RA | 15..936 | 1..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:33 Download gff for
FMO01920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4036-RA | 70..991 | 1..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:47 Download gff for
FMO01920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4036-RA | 70..991 | 1..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:47 Download gff for
FMO01920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9790966..9791694 | 1..733 | 99 | -> | Plus |
| 2L | 9791755..9791947 | 734..921 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:33 Download gff for
FMO01920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9790966..9791694 | 1..733 | 99 | -> | Plus |
| arm_2L | 9791755..9791947 | 734..921 | 97 | | Plus |
