Clone FMO01927 Report

Search the DGRC for FMO01927

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:19
Well:27
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG11586-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01927.5prime Sequence

608 bp (608 high quality bases) assembled on 2008-04-28

> FMO01927.5prime
CAGTCGACATGACGATGCGACCTGATGACCACCGAAGGAAATGGGACAAG
AACGAGTACGAGAAGCTGGCGGCGGAGCGGCTGCTCAACCAGGTGGCACC
CAAGGAAGAAGAACCCGTACAGCGGGAGAACCTCAAGCGACGCGACTATA
AGGTGGACCTGGACAGCAAGCTGGGCAAGAGCGTTGTCATCAACAAGAAC
ACACCCACCTCGCAATCCGGTGGCTATTACTGCAACGTTTGCGACTGCGT
GGTCAAGGATTCCATCAACTTTCTGGACCACATCAATGGCAAGAAGCACC
AGCGCAATCTGGGCATGTCCATGAAGGTGGAGCGGAGCACCGTCGACCAG
GTAAAGGAGCGCTTCCAGCAGAACAAGAAGAAGATGGAGGAGAAGCAGAA
AGACTACGAGCTCGAGCGCCGCCTGCGGGAGGCCAAGGAGGAGGAGGATC
GCTACAAGGAACACCGCAAGGAGAAGCGAAAAGAGCGGAAGCGCAAGGCC
GAGGACACGGACTTCGAGTCCGGCGGCATGCCCGACGACATGGCCGCCAT
CATGGGCTTCTCCGGCTTCGGTGGATCAAAGAAGAACTCGGCAAGCTTTC
TAGACCAT

FMO01927.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG11586-RB 760 CG11586-RB 104..686 8..590 2915 100 Plus
CG11586-RA 1115 CG11586-RA 104..686 8..590 2915 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4261726..4262206 590..110 2405 100 Minus
3L 28110227 3L 4262264..4262367 111..8 520 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:21:51 has no hits.

FMO01927.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:59:33 Download gff for FMO01927.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11586-RA 86..677 1..590 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:47 Download gff for FMO01927.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11586-RA 95..686 1..590 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:34 Download gff for FMO01927.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11586-RA 95..686 1..590 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:34 Download gff for FMO01927.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4261726..4262204 112..590 100 <- Minus
3L 4262264..4262370 1..111 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:47 Download gff for FMO01927.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4261726..4262204 112..590 100 <- Minus
arm_3L 4262264..4262370 1..111 96   Minus